Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003792.1 Kokia drynarioides strain JFW-HI SEQ_116775, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1676
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27


Found at i:1544 original size:19 final size:19

Alignment explanation


    Indices: 1515--1560  Score: 83
    Period size: 19  Copynumber: 2.4  Consensus size: 19

       1505 TTATTTTGCT

                                
       1515 CTTTAGACTTTCATTTCATC
          1 CTTT-GACTTTCATTTCATC

                               
       1535 CTTTGACTTTCATTTCATC
          1 CTTTGACTTTCATTTCATC

                   
       1554 CTTTGAC
          1 CTTTGAC

       1561 AGATCCCCAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  19   22  0.85
  20    4  0.15

ACGTcount: A:0.17, C:0.26, G:0.07, T:0.50


Consensus pattern (19 bp):   
CTTTGACTTTCATTTCATC
Done.