Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000380.1 Kokia drynarioides strain JFW-HI SEQ_111174, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2155
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.29


Found at i:647 original size:14 final size:15

Alignment explanation


    Indices: 612--647  Score: 56
    Period size: 15  Copynumber: 2.5  Consensus size: 15

        602 AGGTGACAGA

                           
        612 CTTGGGTCACACGGG
          1 CTTGGGTCACACGGG

            *              
        627 TTTGGGTCACAC-GG
          1 CTTGGGTCACACGGG

                   
        641 CTTGGGT
          1 CTTGGGT

        648 ATTGGGTATT


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  14    8  0.42
  15   11  0.58

ACGTcount: A:0.11, C:0.22, G:0.39, T:0.28


Consensus pattern (15 bp):   
CTTGGGTCACACGGG
Done.