Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003802.1 Kokia drynarioides strain JFW-HI SEQ_116791, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15425
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32


Found at i:4606 original size:41 final size:42

Alignment explanation


    Indices: 4528--4608  Score: 137
    Period size: 41  Copynumber: 2.0  Consensus size: 42

       4518 ATGTAATTTT

                                        *             
       4528 TTTAGTAATATGAAAAAAAAAACTAATATTTAGTAACCAATA
          1 TTTAGTAATATGAAAAAAAAAACTAATAATTAGTAACCAATA

                                            *       
       4570 TTTAGTAATAT-AAAAAAAAAACTAATAATTATTAACCAA
          1 TTTAGTAATATGAAAAAAAAAACTAATAATTAGTAACCAA

       4609 ACAAAGAAAA


Statistics
Matches: 37,  Mismatches: 2, Indels: 1
        0.93            0.05        0.03

Matches are distributed among these distances:
  41   26  0.70
  42   11  0.30

ACGTcount: A:0.57, C:0.07, G:0.05, T:0.31


Consensus pattern (42 bp):   
TTTAGTAATATGAAAAAAAAAACTAATAATTAGTAACCAATA

Found at i:11466 original size:18 final size:18

Alignment explanation


    Indices: 11443--11478  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

      11433 CATTTATATA

                              
      11443 CGCTTTCATATGAAGTGT
          1 CGCTTTCATATGAAGTGT

                              
      11461 CGCTTTCATATGAAGTGT
          1 CGCTTTCATATGAAGTGT

      11479 ATGAGTATGA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.22, C:0.17, G:0.22, T:0.39


Consensus pattern (18 bp):   
CGCTTTCATATGAAGTGT
Done.