genome.fa.s381.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01000381.1 Kokia drynarioides strain JFW-HI SEQ_111181, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119051

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
620--863	41	6.0	41	77	4	188	20	26	19	33	1.97
620--822	82	2.5	83	81	4	232	21	26	19	32	1.97
3017--3074	26	2.2	25	79	8	62	29	20	22	27	1.99
4775--4822	23	2.1	24	88	7	73	29	12	14	43	1.82
4774--4827	23	2.2	26	81	18	71	29	11	12	46	1.77
5899--5945	12	4.0	12	80	5	60	53	2	0	44	1.12
5901--5946	23	2.0	23	91	0	74	56	2	0	41	1.11
11225--11270	22	2.0	24	84	16	62	56	0	4	39	1.19
21050--21074	3	8.3	3	100	0	50	32	0	0	68	0.90
23480--23533	25	2.2	25	82	0	63	64	9	7	18	1.45
25155--25229	37	2.0	37	97	0	141	26	10	24	38	1.88
26321--26351	15	2.1	15	100	0	62	32	48	12	6	1.67
33574--33652	40	2.0	40	89	0	122	13	20	29	36	1.91
37985--38029	16	2.8	16	83	10	56	75	0	6	17	1.01
37970--38029	22	2.8	22	87	7	79	76	1	6	15	1.06
38828--38870	19	2.3	19	84	8	52	58	4	0	37	1.19
41434--41473	21	1.9	21	94	0	71	27	17	12	42	1.85
41441--41484	21	2.1	21	82	0	52	31	15	11	40	1.83
42782--42828	22	2.2	22	96	3	87	74	0	8	17	1.05
42782--42843	22	2.8	21	79	20	72	74	0	9	16	1.07
43623--43665	19	2.3	19	84	8	52	58	4	0	37	1.19
45387--45489	54	1.9	54	97	0	197	43	13	17	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45757--45816	12	4.9	12	74	10	50	53	3	3	40	1.34
45757--45790	15	2.2	16	94	5	61	55	0	0	44	0.99
45803--45848	24	2.0	23	82	4	56	60	2	0	36	1.09
46872--47043	29	5.8	29	78	8	159	35	28	2	33	1.72
46884--47165	59	4.8	58	79	6	232	37	25	2	34	1.69
47031--47135	30	3.5	31	74	16	96	43	22	0	33	1.54
46882--47165	29	9.7	28	74	11	135	37	25	2	34	1.70
58897--59103	115	1.8	114	86	1	297	33	17	24	24	1.97
59003--59603	206	2.9	205	89	1	873	35	18	23	23	1.96
59951--59992	22	1.9	22	90	0	66	38	0	9	52	1.34
59951--59982	11	2.8	12	81	18	50	40	0	12	46	1.42
59985--60018	6	5.8	6	86	6	52	44	0	2	52	1.16
60862--60977	30	3.9	30	77	15	100	37	22	3	37	1.71
60861--60985	59	2.1	58	81	11	139	35	23	3	38	1.71
60859--60985	29	4.3	30	76	16	113	34	23	3	38	1.71
60893--60987	30	3.2	29	72	19	88	35	23	2	38	1.67
60939--61079	58	2.4	59	78	4	151	33	24	3	39	1.72
61060--61119	28	2.1	28	84	0	75	38	26	8	26	1.85
63479--63505	2	13.5	2	100	0	54	0	0	48	51	1.00
67721--67878	56	2.8	57	80	7	180	41	3	3	51	1.33
67846--67894	26	1.9	25	87	4	71	48	6	0	44	1.27
69355--69391	18	2.0	19	89	5	58	54	0	5	40	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78404--78445	19	2.3	19	84	12	52	61	4	0	33	1.17
80764--80795	16	2.0	16	100	0	64	31	25	12	31	1.92
91348--91495	79	1.9	79	87	1	217	43	9	14	32	1.78
91964--92024	24	2.5	24	73	21	63	42	16	14	26	1.87
95893--96228	52	6.5	52	89	2	437	35	23	14	26	1.94
102817--102860	19	2.4	17	82	14	52	75	0	18	6	1.02
106301--106349	22	2.2	22	81	0	62	18	26	14	40	1.89
109564--109607	20	2.2	20	84	15	56	43	0	4	52	1.22
112156--112221	16	4.4	16	68	26	54	54	10	0	34	1.35
112445--112481	18	2.2	16	90	9	56	37	0	2	59	1.12
112449--112538	44	2.0	44	89	0	135	38	7	2	51	1.43
112803--112843	20	2.0	20	90	0	64	70	2	0	26	0.99
118893--118928	18	1.9	19	88	5	56	44	0	2	52	1.15

Tables:   1

The End!