Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003811.1 Kokia drynarioides strain JFW-HI SEQ_116807, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4322
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33


Found at i:1375 original size:19 final size:17

Alignment explanation


    Indices: 1338--1376  Score: 51
    Period size: 19  Copynumber: 2.2  Consensus size: 17

       1328 TGCAGAAAGA

                             
       1338 ATTGAGAATGAGAGATG
          1 ATTGAGAATGAGAGATG

                          *    
       1355 ATTGATGAATGAAGGGATG
          1 ATTGA-GAATG-AGAGATG

               
       1374 ATT
          1 ATT

       1377 TTGAACTGAG


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  17    5  0.26
  18    5  0.26
  19    9  0.47

ACGTcount: A:0.38, C:0.00, G:0.33, T:0.28


Consensus pattern (17 bp):   
ATTGAGAATGAGAGATG
Done.