Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003817.1 Kokia drynarioides strain JFW-HI SEQ_116813, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 913

Length: 1522
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35


Found at i:444 original size:38 final size:38

Alignment explanation


    Indices: 402--488  Score: 131
    Period size: 38  Copynumber: 2.3  Consensus size: 38

        392 TTGGTACTAA

                                               *   
        402 TGTCGTTGCATGAGTATTTTCAAATTTGC-TTCTAGGAT
          1 TGTCGTTGCATGAGTATTTTCAAATTTGCTTTC-AAGAT

                 *                                
        440 TGTCGCTGCATGAGTATTTTCAAATTTGCTTTCAAGAT
          1 TGTCGTTGCATGAGTATTTTCAAATTTGCTTTCAAGAT

                  *    
        478 TGTCGTCGCAT
          1 TGTCGTTGCAT

        489 CTGACAACTA


Statistics
Matches: 44,  Mismatches: 4, Indels: 2
        0.88            0.08        0.04

Matches are distributed among these distances:
  38   41  0.93
  39    3  0.07

ACGTcount: A:0.21, C:0.16, G:0.21, T:0.43


Consensus pattern (38 bp):   
TGTCGTTGCATGAGTATTTTCAAATTTGCTTTCAAGAT
Done.