genome.fa.s3818.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01003818.1 Kokia drynarioides strain JFW-HI SEQ_116814, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50228

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172--208	18	2.2	17	90	9	58	5	40	0	54	1.24
997--1055	21	2.6	22	75	17	59	62	0	5	32	1.17
4058--4107	19	2.8	18	76	11	50	74	4	2	20	1.08
4164--4342	29	6.1	28	80	9	146	34	3	26	35	1.73
4174--4333	29	5.5	30	86	3	204	36	3	24	36	1.71
4176--4364	86	2.2	88	85	6	251	35	3	24	35	1.74
4176--4342	30	5.8	28	82	9	176	35	3	25	35	1.73
6052--6119	11	6.0	11	70	23	52	55	2	1	39	1.24
6045--6126	6	13.8	6	73	15	64	54	2	1	41	1.21
6053--6121	17	4.1	17	88	0	102	56	2	1	39	1.23
6043--6126	23	3.6	23	76	15	66	55	2	1	40	1.20
6385--6448	23	2.9	23	73	17	64	31	1	10	56	1.43
22425--22488	21	3.0	21	90	4	94	31	14	28	26	1.95
27583--27985	89	4.5	88	78	6	298	38	2	23	35	1.67
27576--28015	59	7.4	60	73	9	280	38	2	23	35	1.68
27575--28015	30	14.9	30	73	9	273	38	2	23	35	1.68
27686--27985	90	3.4	89	80	10	312	37	2	24	36	1.69
29799--30207	207	2.0	207	92	0	674	23	21	17	37	1.94
30119--30258	48	2.9	48	86	0	199	24	24	15	36	1.93
30010--30378	171	2.2	171	93	0	630	22	21	17	38	1.93
30298--30458	85	1.9	85	84	0	214	22	22	16	39	1.92
30181--30641	208	2.2	208	89	1	710	22	21	17	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30652--30818	39	4.3	39	81	3	201	27	19	26	25	1.99
30643--30817	78	2.2	78	85	5	237	27	18	28	26	1.98
31048--31705	99	6.7	99	75	4	506	17	28	17	35	1.93
31043--31832	50	16.1	50	72	5	450	17	28	18	35	1.94
31041--31628	197	3.0	195	74	4	561	17	28	17	36	1.93
31499--31870	98	3.8	97	76	6	257	19	30	16	33	1.94
37566--38097	30	17.9	30	80	8	482	37	0	24	37	1.61
37550--38097	60	9.2	59	80	8	551	37	0	24	37	1.61
37566--38097	89	6.0	89	80	8	575	37	0	24	37	1.61
37550--38097	119	4.6	117	80	8	583	37	0	24	37	1.61
39699--39762	21	3.0	21	93	0	101	29	15	25	29	1.96
42747--42786	17	2.4	17	86	0	53	40	7	2	50	1.44

Tables:   1

The End!