Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000382.1 Kokia drynarioides strain JFW-HI SEQ_111182, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5008
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34


Found at i:530 original size:12 final size:12

Alignment explanation


    Indices: 513--539  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        503 CTCTAGGTTG

                        
        513 TTTTTATTGATC
          1 TTTTTATTGATC

                        
        525 TTTTTATTGATC
          1 TTTTTATTGATC

               
        537 TTT
          1 TTT

        540 AAGCTATGCA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.15, C:0.07, G:0.07, T:0.70


Consensus pattern (12 bp):   
TTTTTATTGATC
Done.