Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003835.1 Kokia drynarioides strain JFW-HI SEQ_116844, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1733
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.31


Found at i:472 original size:50 final size:47

Alignment explanation


    Indices: 370--485  Score: 142
    Period size: 50  Copynumber: 2.4  Consensus size: 47

        360 GTTATAGTAA

                *                                *  *      
        370 TGCAGATAAACTACCACTTAATATTATTATGGATAAGTCATCACTTT
          1 TGCAAATAAACTACCACTTAATATTATTATGGATAAGCCACCACTTT

            *                              *              *   
        417 GGCAAATAAACTACCACTTAATAATAATATTGTGGATAAGCCACCAGTTT
          1 TGCAAATAAACTACCACTTAAT-AT--TATTATGGATAAGCCACCACTTT

                        *      
        467 TGCAAATAAACTGCCACTT
          1 TGCAAATAAACTACCACTT

        486 CTTCCACCTT


Statistics
Matches: 58,  Mismatches: 8, Indels: 3
        0.84            0.12        0.04

Matches are distributed among these distances:
  47   20  0.34
  48    2  0.03
  50   36  0.62

ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31


Consensus pattern (47 bp):   
TGCAAATAAACTACCACTTAATATTATTATGGATAAGCCACCACTTT
Done.