genome.fa.s3843.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01003843.1 Kokia drynarioides strain JFW-HI SEQ_116862, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78409

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6797--6844	23	2.2	21	85	10	62	27	18	27	27	1.98
11391--11457	23	2.9	23	88	0	107	31	17	25	25	1.97
14890--15056	87	1.9	87	90	2	264	18	32	18	30	1.95
17078--17180	38	2.7	37	85	4	118	45	20	12	21	1.84
21075--21162	45	2.0	45	93	0	149	7	23	7	60	1.51
21080--21164	23	3.8	22	72	9	73	5	23	7	63	1.42
27514--27682	23	7.2	23	87	2	194	70	20	2	7	1.22
27514--27682	47	3.6	47	84	2	207	70	20	2	7	1.22
27514--27670	12	13.3	12	82	4	185	70	19	2	7	1.23
27676--27765	20	4.4	20	90	2	126	67	17	5	8	1.37
27667--27766	41	2.4	41	85	3	130	69	18	5	8	1.32
31629--31793	57	2.9	57	82	8	210	53	1	1	42	1.22
31633--31795	58	2.8	56	81	10	204	53	1	1	42	1.22
35515--35551	19	1.9	19	88	0	56	43	16	0	40	1.48
35553--35616	29	2.2	30	80	8	78	45	4	1	48	1.32
44908--44951	22	2.0	22	82	8	54	43	11	4	40	1.61
47780--47872	46	2.0	46	97	0	177	38	11	10	38	1.77
54625--54686	28	2.2	28	91	0	97	29	8	29	33	1.86
54695--55103	59	6.9	59	76	9	309	37	2	26	33	1.70
54637--54983	29	11.9	29	67	11	154	34	2	27	34	1.72
54675--55069	118	3.3	117	80	7	397	36	2	26	34	1.70
54929--55098	90	1.9	91	80	8	204	38	2	27	31	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54902--55075	61	2.9	61	78	8	153	39	2	27	31	1.71
54917--55106	29	6.4	29	73	10	134	39	2	25	32	1.70
55037--55132	29	3.3	29	86	0	120	44	1	19	34	1.58
55022--55157	29	4.6	29	84	3	112	42	1	21	34	1.62
56310--56338	3	10.0	3	92	7	51	65	0	0	34	0.93
56989--57045	17	3.4	16	76	11	51	43	1	1	52	1.21
57016--57113	6	16.5	6	69	10	67	53	1	4	41	1.27
57016--57113	17	5.5	17	80	8	106	53	1	4	41	1.27
57016--57113	37	2.8	35	84	7	126	53	1	4	41	1.27
63523--63693	91	1.9	91	86	2	245	30	14	35	19	1.92
63613--63795	49	3.7	49	72	8	147	34	16	31	17	1.93
64131--65649	39	39.2	39	66	8	368	23	29	19	27	1.98
64172--65431	78	16.3	78	74	5	831	23	29	19	27	1.98
64172--65430	156	8.1	156	77	6	955	23	29	19	27	1.98
64913--64977	34	1.9	34	87	0	94	21	36	18	23	1.95
64748--65310	194	2.9	195	77	5	498	23	29	19	27	1.98
64595--65617	272	3.8	272	74	6	757	23	29	19	27	1.98
66221--66261	6	7.0	6	78	15	50	43	0	4	51	1.23
66222--66255	17	2.1	16	88	5	50	41	0	5	52	1.25
66447--66495	19	2.6	19	90	0	62	24	44	12	18	1.84
70501--70577	32	2.4	33	77	4	84	62	6	5	25	1.41
75558--75634	32	2.4	33	77	4	84	62	6	5	25	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76625--76668	22	2.0	22	82	8	54	43	11	4	40	1.61
77772--77858	17	5.1	17	77	5	86	43	1	2	52	1.21
77771--77868	34	2.8	34	84	6	108	44	1	2	52	1.19

Tables:   1

The End!