Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003853.1 Kokia drynarioides strain JFW-HI SEQ_116878, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6420
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35


Found at i:6275 original size:3 final size:3

Alignment explanation


    Indices: 6267--6311  Score: 90
    Period size: 3  Copynumber: 15.0  Consensus size: 3

       6257 TTACCACCGT

                                                                       
       6267 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA

       6312 AATTTAATAT


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   42  1.00

ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67


Consensus pattern (3 bp):   
TTA

Done.