Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003855.1 Kokia drynarioides strain JFW-HI SEQ_116880, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2403
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.35


Found at i:1261 original size:35 final size:35

Alignment explanation


    Indices: 1215--1330  Score: 153
    Period size: 35  Copynumber: 3.3  Consensus size: 35

       1205 GATAGCTCAA

                                          *    
       1215 TTAGAGCGTAAGGCTTTGGATTGCTTACATGTCGG
          1 TTAGAGCGTAAGGCTTTGGATTGCTTACATCTCGG

                             *          *      
       1250 TTAGAGCGTAAGGCTTTAGATTGCTTACGTCTCGG
          1 TTAGAGCGTAAGGCTTTGGATTGCTTACATCTCGG

            *      *                     *      
       1285 CTAGAGCATAAGG-TTATGGATTGCTTACTTCTCGG
          1 TTAGAGCGTAAGGCTT-TGGATTGCTTACATCTCGG

               *       
       1320 TTAAAGCGTAA
          1 TTAGAGCGTAA

       1331 AGCTATTTCA


Statistics
Matches: 70,  Mismatches: 10, Indels: 2
        0.85            0.12        0.02

Matches are distributed among these distances:
  34    2  0.03
  35   68  0.97

ACGTcount: A:0.23, C:0.16, G:0.28, T:0.34


Consensus pattern (35 bp):   
TTAGAGCGTAAGGCTTTGGATTGCTTACATCTCGG
Done.