Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003856.1 Kokia drynarioides strain JFW-HI SEQ_116882, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1904
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39


Found at i:307 original size:21 final size:21

Alignment explanation


    Indices: 281--330  Score: 73
    Period size: 21  Copynumber: 2.4  Consensus size: 21

        271 AAATTACGTT

                                 
        281 CTTCTTCACGCACGCCCTTCC
          1 CTTCTTCACGCACGCCCTTCC

                        *      **
        302 CTTCTTCACGCATGCCCTTTT
          1 CTTCTTCACGCACGCCCTTCC

                    
        323 CTTCTTCA
          1 CTTCTTCA

        331 GTCTTATCTT


Statistics
Matches: 26,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   26  1.00

ACGTcount: A:0.10, C:0.44, G:0.08, T:0.38


Consensus pattern (21 bp):   
CTTCTTCACGCACGCCCTTCC

Done.