Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003859.1 Kokia drynarioides strain JFW-HI SEQ_116887, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 867

Length: 1445
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30


Found at i:966 original size:4 final size:5

Alignment explanation


    Indices: 946--981  Score: 56
    Period size: 5  Copynumber: 7.2  Consensus size: 5

        936 TGAGGATATT

                                                        
        946 TTTTC TTTTC TTTTC -TTTC TTTTTC TTTTC TTTTC T
          1 TTTTC TTTTC TTTTC TTTTC -TTTTC TTTTC TTTTC T

        982 GGTTTGAACC


Statistics
Matches: 29,  Mismatches: 0, Indels: 4
        0.88            0.00        0.12

Matches are distributed among these distances:
   4    4  0.14
   5   21  0.72
   6    4  0.14

ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81


Consensus pattern (5 bp):   
TTTTC

Done.