Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000386.1 Kokia drynarioides strain JFW-HI SEQ_111190, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5712
ACGTcount: A:0.36, C:0.12, G:0.11, T:0.40


Found at i:2169 original size:25 final size:26

Alignment explanation


    Indices: 2120--2169  Score: 66
    Period size: 25  Copynumber: 2.0  Consensus size: 26

       2110 GATTGAATTT

                                *     
       2120 AAATAATAATGTAAATATTACAAAAC
          1 AAATAATAATGTAAATATTAAAAAAC

                 *          *        
       2146 AAATACTAAT-TAAATTTTAAAAAA
          1 AAATAATAATGTAAATATTAAAAAA

       2170 ACTAAACTTG


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  25   12  0.57
  26    9  0.43

ACGTcount: A:0.62, C:0.06, G:0.02, T:0.30


Consensus pattern (26 bp):   
AAATAATAATGTAAATATTAAAAAAC

Found at i:3437 original size:2 final size:2

Alignment explanation


    Indices: 3427--3461  Score: 63
    Period size: 2  Copynumber: 18.0  Consensus size: 2

       3417 TTTATAGAAC

                                                                 
       3427 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       3462 TTATCCATAT


Statistics
Matches: 32,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   31  0.97

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.