Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003865.1 Kokia drynarioides strain JFW-HI SEQ_116898, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3165
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31


Found at i:1770 original size:26 final size:23

Alignment explanation


    Indices: 1741--1806  Score: 60
    Period size: 24  Copynumber: 2.6  Consensus size: 23

       1731 TTAGATAAAA

                                      
       1741 ATAAATAATTTATTATAATGCATTTT
          1 ATAAATAATTT-TTAT-AT-CATTTT

                   *                
       1767 ATAATATTATTTTTATATCATTTT
          1 ATAA-ATAATTTTTATATCATTTT

             *              
       1791 AAATAATAATATTTTA
          1 ATA-AATAAT-TTTTA

       1807 ATTAAAAACA


Statistics
Matches: 34,  Mismatches: 3, Indels: 7
        0.77            0.07        0.16

Matches are distributed among these distances:
  24   12  0.35
  25    8  0.24
  26    8  0.24
  27    6  0.18

ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53


Consensus pattern (23 bp):   
ATAAATAATTTTTATATCATTTT

Found at i:1889 original size:17 final size:17

Alignment explanation


    Indices: 1869--1904  Score: 54
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       1859 AATATATAAA

                     *    *  
       1869 TTATTATATTATATTAT
          1 TTATTATATGATATGAT

                             
       1886 TTATTATATGATATGAT
          1 TTATTATATGATATGAT

              
       1903 TT
          1 TT

       1905 CTTACAAATG


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61


Consensus pattern (17 bp):   
TTATTATATGATATGAT
Done.