Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01003871.1 Kokia drynarioides strain JFW-HI SEQ_116905, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2573
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Found at i:654 original size:156 final size:156
Alignment explanation
Indices: 368--686 Score: 505
Period size: 156 Copynumber: 2.0 Consensus size: 156
358 GATGGAAAGA
*
368 ACTGAAGGGTTCTTCAAGACATTGGCAACATTGTCAATGAACGAGCAGCAGCACAAGGGAAGGTA
1 ACTGAAGAGTTCTTCAAGACATTGGCAACATTGTCAATGAACGAGCAGCAGCACAAGGGAAGGTA
* * ** * *
433 GTTAACACAAATATTTTTCGTTTTAATTGTCGTAGCAAATATTAGGCGATCACTAATTGCCCTTT
66 GTTAACACAAAAATGTTTCGTTTTAATTGAAGTAACAAATATTAGGCAATCACTAATTGCCCTTT
498 GTGTTTTTTTCTTGTACAAACCAATC
131 GTGTTTTTTTCTTGTACAAACCAATC
* * *
524 ACTGAAGAGTT-TGTCAAGGCATTGGGAACATTGTCAATGAATGAGCAGCAGCACAAGGGAAGGT
1 ACTGAAGAGTTCT-TCAAGACATTGGCAACATTGTCAATGAACGAGCAGCAGCACAAGGGAAGGT
* *
588 AGTTAAGACAAAAATGTTTCGTTTTAATTGAAGTAACAAATATTAGGCAATCACTAATTGCTCTT
65 AGTTAACACAAAAATGTTTCGTTTTAATTGAAGTAACAAATATTAGGCAATCACTAATTGCCCTT
*
653 TGTGTTTTTTTCTTGTAGAAACCAATC
130 TGTGTTTTTTTCTTGTACAAACCAATC
680 ACTGAAG
1 ACTGAAG
687 GGGATGTTGT
Statistics
Matches: 149, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
155 1 0.01
156 148 0.99
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (156 bp):
ACTGAAGAGTTCTTCAAGACATTGGCAACATTGTCAATGAACGAGCAGCAGCACAAGGGAAGGTA
GTTAACACAAAAATGTTTCGTTTTAATTGAAGTAACAAATATTAGGCAATCACTAATTGCCCTTT
GTGTTTTTTTCTTGTACAAACCAATC
Found at i:1045 original size:291 final size:290
Alignment explanation
Indices: 527--1847 Score: 1551
Period size: 292 Copynumber: 4.6 Consensus size: 290
517 ACCAATCACT
* * * *
527 GAAGAGTT-TGTCAAGGCATTGGGAACATTGTCAATGAATGAGCAGCAGCACAAGGGAAGGTAG-
1 GAAGAGTTCT-TCAAGACATTGGTAACTTTGTCAATGAACGAGCAGCAGCACAAGGGAAGGTAGT
* * * *
590 -T---T-AAGACAAAAATGTTTCGTTTTAATT-GAAGTAACAAATATTAGGCAATCACTAATTGC
65 TTCAGTAAACACAAAAATGTTTCTTTTTCATTAG-AGTAGCAAATATTAGGCAATCACTAATTGC
* * * *
649 TCTTTGTGTTTTTTT-CTTGTAGAAACCAATCACTGAAGGGGATGTTGTGGTTGGACGAG-TAGT
129 TC-TTG-GTTTTTTTGCTTGTAGAAACCAATCACCGAAGGGGCTGTTGTGGTTGCACAAGCT-GT
**
712 GAAAGGAGCTCAAAGGAAGCAAGTTGACAGGCCAATTTTATACTTTCTTTGTTTTCAGGAGGAGT
191 GAAAGGAGCTCAAAGGAAGCAAGTTGACAAACCAATTTTATACTTTCTTTGTTTTCAGGAGGAGT
* * *
777 GAAGCAGAAAAATGTAATAGTAGATGGAAGGAAGC
256 GAAGCAGAAAAATGCAATAGCAGATGGAAGGAACC
* *
812 GAAGAGTTCTTCAAGACATTGGTAACTTTGTCAATGAACAAGCAGCAGCACAAGGTAAGGTAGTT
1 GAAGAGTTCTTCAAGACATTGGTAACTTTGTCAATGAACGAGCAGCAGCACAAGGGAAGGTAGTT
* *
877 TCAGTAAACACAAAAATATTTCTTTTTCATTAGAGTAGCAAATATTAGGCAATCACTAATTGTTC
66 TCAGTAAACACAAAAATGTTTCTTTTTCATTAGAGTAGCAAATATTAGGCAATCACTAATTGCTC
* *
942 TTGGTTATTTTTGCTTGTAGAAACCAATCTCCGAAGGGGCTGTTGTGGTTGCACAAGCTGTGAAG
131 TTGGTT-TTTTTGCTTGTAGAAACCAATCACCGAAGGGGCTGTTGTGGTTGCACAAGCTGTGAAA
* * *
1007 GGAGCTCAAAGGAAGCAAGTTGACAAACCATTTTTATACTTTCTTTGTTTTTAAGGA-GATGTGG
195 GGAGCTCAAAGGAAGCAAGTTGACAAACCAATTTTATACTTTCTTTG-TTTTCAGGAGGA-GTGA
*
1071 AGCAGAAAAATGCAATTGCAGATGGAAGGAACC
258 AGCAGAAAAATGCAATAGCAGATGGAAGGAACC
1104 GAAGAGTTCTTCAAGACATTGGTAACTTTGTCAATGAACGAGCAGCAGCACAAGGGAAGGTAGTT
1 GAAGAGTTCTTCAAGACATTGGTAACTTTGTCAATGAACGAGCAGCAGCACAAGGGAAGGTAGTT
* * *
1169 CCAGCAAACACAAAAATGTTTCTTTTTCATTATAGTAGCAAATATTAGGCAATCACTAATTGCTC
66 TCAGTAAACACAAAAATGTTTCTTTTTCATTAGAGTAGCAAATATTAGGCAATCACTAATTGCTC
* * * * * *
1234 TTGGTGTTTTTTGCTTGTAAAAACCAATCACCGTAGGGACAGTTGTGGTTGCGCAAGCTTTGAAA
131 TTGGT-TTTTTTGCTTGTAGAAACCAATCACCGAAGGGGCTGTTGTGGTTGCACAAGCTGTGAAA
* * * * * * *
1299 GGAGCCCAAATGAAGTAAGTTGGCAAACCAATTTTATAATTTCTTTTTTCTTTTCAGGAGGATTG
195 GGAGCTCAAAGGAAGCAAGTTGACAAACCAATTTTATACTTTC---TTTGTTTTCAGGAGGAGTG
* * ** *
1364 AAGCAGAGAAATGCAACATTAGATGGAAAGAACC
257 AAGCAGAAAAATGCAATAGCAGATGGAAGGAACC
* * * * * *
1398 GAATAGTTCGTCAAGACTTTGGCAACTTTGTCAATGAACGAGCAGCAACGCAAGGGAAGGTA-TT
1 GAAGAGTTCTTCAAGACATTGGTAACTTTGTCAATGAACGAGCAGCAGCACAAGGGAAGGTAGTT
* * *
1462 TCTAGTAAACAC-AAAATTTTTACTTTTTCATTATG-GTCGGAAATATTAGGCAATCACTAATTG
66 TC-AGTAAACACAAAAATGTTT-CTTTTTCATTA-GAGTAGCAAATATTAGGCAATCACTAATTG
* * * *
1525 CACTTTGTGTTTTTTTGCTTGTAGAATCCAATCACCGAAGGGGTTGTTGTGGTTGGACAAGCTGT
128 CTC-TTG-GTTTTTTTGCTTGTAGAAACCAATCACCGAAGGGGCTGTTGTGGTTGCACAAGCTGT
* * *
1590 GAAAGGAGACT-AAAGGAAGCAAGTTGACAAATCATTTTTATACTTTCTTTGTTTAT-AGGAGAA
191 GAAAGGAG-CTCAAAGGAAGCAAGTTGACAAACCAATTTTATACTTTCTTTGTTT-TCAGGAGGA
* **
1653 GTGAAGCAGAAGAATGCAATAGCAGATGGAAGGAAGT
254 GTGAAGCAGAAAAATGCAATAGCAGATGGAAGGAACC
* * * * *
1690 GAAGGGTTCTTCAAGTC-TT-GTAACATTGTGAATGAAAGAGCAGCAGCACAAGGGAAGGTAG--
1 GAAGAGTTCTTCAAGACATTGGTAACTTTGTCAATGAACGAGCAGCAGCACAAGGGAAGGTAGTT
* * * *
1751 T---T-AACATAAAAATGTTTCGTTTTAATT-GTAGTAGCAAATATTAGGCGATCACTAATTGCT
66 TCAGTAAACACAAAAATGTTTCTTTTTCATTAG-AGTAGCAAATATTAGGCAATCACTAATTGCT
* * *
1811 CTTTGTGTCTTTTT-CTTGTACAAACCAATCACTGAAG
130 C-TTG-GTTTTTTTGCTTGTAGAAACCAATCACCGAAG
1848 AGTTCTTCAA
Statistics
Matches: 887, Mismatches: 120, Indels: 60
0.83 0.11 0.06
Matches are distributed among these distances:
282 1 0.00
283 20 0.02
284 51 0.06
285 64 0.07
286 1 0.00
287 1 0.00
289 4 0.00
290 44 0.05
291 143 0.16
292 310 0.35
293 13 0.01
294 140 0.16
295 92 0.10
296 3 0.00
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (290 bp):
GAAGAGTTCTTCAAGACATTGGTAACTTTGTCAATGAACGAGCAGCAGCACAAGGGAAGGTAGTT
TCAGTAAACACAAAAATGTTTCTTTTTCATTAGAGTAGCAAATATTAGGCAATCACTAATTGCTC
TTGGTTTTTTTGCTTGTAGAAACCAATCACCGAAGGGGCTGTTGTGGTTGCACAAGCTGTGAAAG
GAGCTCAAAGGAAGCAAGTTGACAAACCAATTTTATACTTTCTTTGTTTTCAGGAGGAGTGAAGC
AGAAAAATGCAATAGCAGATGGAAGGAACC
Found at i:1663 original size:586 final size:576
Alignment explanation
Indices: 527--1847 Score: 1759
Period size: 586 Copynumber: 2.3 Consensus size: 576
517 ACCAATCACT
* * *
527 GAAGAGTT-TGTCAAGGCATTGGGAACATTGTCAATGAATGAGCAGCAGCACAAGGGAAGGTAGT
1 GAAGAGTTCT-TCAAGACATTGGTAACATTGTCAATGAAAGAGCAGCAGCACAAGGGAAGGTAGT
* *
591 TAAGACAAAAATGTTTCGTTTTAATTGA-AGTAACAAATATTAGGCAATCACTAATTGCTCTTTG
65 TAACACAAAAATGTTTCGTTTTAATT-ATAGTAGCAAATATTAGGCAATCACTAATTGCTCTTTG
* * * *
655 TGTTTTTTTCTTGTAGAAACCAATCACTGAAGGGGATGTTGTGGTTGGACGAGTAGTGAAAGGAG
129 TG-TTTTTTCTTGTAAAAACCAATCACCGAAGGGGAAGTTGTGGTTGGACAAGTAGTGAAAGGAG
* ** * *
720 CTCAAAGGAAGCAAGTTGACAGGCCAATTTTATACTTTCTTTGTTTTCAGGAGGAGTGAAGCAGA
193 CCCAAAGGAAGCAAGTTGACAAACCAATTTTATAATTTCTTTCTTTTCAGGAGGAGTGAAGCAGA
* * * * * *
785 AAAATGTAATAGTAGATGGAAGGAAGCGAAGAGTTCTTCAAGACATTGGTAACTTTGTCAATGAA
258 AAAATGCAACAGTAGATGGAAAGAACCGAAGAGTTCGTCAAGACATTGGCAACTTTGTCAATGAA
* *
850 CAAGCAGCAGCACAAGGTAAGGTAGTTTCAGTAAACACAAAAATATTTCTTTTTCATTAGAGTAG
323 CAAGCAGCAACACAAGGGAAGGTAGTTTCAGTAAACACAAAAATATTTCTTTTTCATTAGAGTAG
** *
915 CAAATATTAGGCAATCACTAATTGTTCTTGGTTATTTTTGCTTGTAGAAACCAATCTCCGAAGGG
388 CAAATATTAGGCAATCACTAATTGCACTTGGTTATTTTTGCTTGTAGAAACCAATCACCGAAGGG
*
980 GCTGTTGTGGTTGCACAAGCTGTGAAGGGAGCTCAAAGGAAGCAAGTTGACAAACCATTTTTATA
453 GCTGTTGTGGTTGCACAAGCTGTGAAAGGAGCTCAAAGGAAGCAAGTTGACAAACCATTTTTATA
* * * *
1045 CTTTCTTTGTTTTTAAGGAGATGTGGAGCAGAAAAATGCAATTGCAGATGGAAGGAACC
518 CTTTCTTTGTTTATAAGGAGAAGTGAAGCAGAAAAATGCAATAGCAGATGGAAGGAACC
* *
1104 GAAGAGTTCTTCAAGACATTGGTAACTTTGTCAATGAACGAGCAGCAGCACAAGGGAAGGTAGTT
1 GAAGAGTTCTTCAAGACATTGGTAACATTGTCAATGAAAGAGCAGCAGCACAAGGGAAGGTAGTT
* *
1169 CCAGCAAACACAAAAATGTTTCTTTTTCATTATAGTAGCAAATATTAGGCAATCACTAATTGCTC
66 ------AACACAAAAATGTTTCGTTTTAATTATAGTAGCAAATATTAGGCAATCACTAATTGCTC
* * *
1234 TTGGTGTTTTTTGCTTGTAAAAACCAATCACCGTA-GGGACAGTTGTGGTTGCG-CAAGCT-TTG
125 TTTGTGTTTTTT-CTTGTAAAAACCAATCACCGAAGGGGA-AGTTGTGGTTG-GACAAG-TAGTG
* * *
1296 AAAGGAGCCCAAATGAAGTAAGTTGGCAAACCAATTTTATAATTTCTTTTTTCTTTTCAGGAGGA
186 AAAGGAGCCCAAAGGAAGCAAGTTGACAAACCAATTTTATAATTTC---TTTCTTTTCAGGAGGA
* * * * *
1361 TTGAAGCAGAGAAATGCAACATTAGATGGAAAGAACCGAATAGTTCGTCAAGACTTTGGCAACTT
248 GTGAAGCAGAAAAATGCAACAGTAGATGGAAAGAACCGAAGAGTTCGTCAAGACATTGGCAACTT
* * *
1426 TGTCAATGAACGAGCAGCAACGCAAGGGAAGGTA-TTTCTAGTAAACAC-AAAATTTTTACTTTT
313 TGTCAATGAACAAGCAGCAACACAAGGGAAGGTAGTTTC-AGTAAACACAAAAATATTT-CTTTT
* * *
1489 TCATTATG-GTCGGAAATATTAGGCAATCACTAATTGCACTTTGTGTT-TTTTTGCTTGTAGAAT
376 TCATTA-GAGTAGCAAATATTAGGCAATCACTAATTGCAC-TTG-GTTATTTTTGCTTGTAGAAA
* *
1552 CCAATCACCGAAGGGGTTGTTGTGGTTGGACAAGCTGTGAAAGGAGACT-AAAGGAAGCAAGTTG
438 CCAATCACCGAAGGGGCTGTTGTGGTTGCACAAGCTGTGAAAGGAG-CTCAAAGGAAGCAAGTTG
* *
1616 ACAAATCATTTTTATACTTTCTTTGTTTAT-AGGAGAAGTGAAGCAGAAGAATGCAATAGCAGAT
502 ACAAACCATTTTTATACTTTCTTTGTTTATAAGGAGAAGTGAAGCAGAAAAATGCAATAGCAGAT
**
1680 GGAAGGAAGT
567 GGAAGGAACC
* * *
1690 GAAGGGTTCTTCAAGTC-TT-GTAACATTGTGAATGAAAGAGCAGCAGCACAAGGGAAGGTAGTT
1 GAAGAGTTCTTCAAGACATTGGTAACATTGTCAATGAAAGAGCAGCAGCACAAGGGAAGGTAGTT
* * *
1753 AACATAAAAATGTTTCGTTTTAATTGTAGTAGCAAATATTAGGCGATCACTAATTGCTCTTTGTG
66 AACACAAAAATGTTTCGTTTTAATTATAGTAGCAAATATTAGGCAATCACTAATTGCTCTTTGTG
* *
1818 TCTTTTTCTTGTACAAACCAATCACTGAAG
131 T-TTTTTCTTGTAAAAACCAATCACCGAAG
1848 AGTTCTTCAA
Statistics
Matches: 651, Mismatches: 70, Indels: 44
0.85 0.09 0.06
Matches are distributed among these distances:
577 59 0.09
578 80 0.12
579 5 0.01
582 11 0.02
583 131 0.20
584 43 0.07
585 14 0.02
586 199 0.31
587 104 0.16
588 5 0.01
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (576 bp):
GAAGAGTTCTTCAAGACATTGGTAACATTGTCAATGAAAGAGCAGCAGCACAAGGGAAGGTAGTT
AACACAAAAATGTTTCGTTTTAATTATAGTAGCAAATATTAGGCAATCACTAATTGCTCTTTGTG
TTTTTTCTTGTAAAAACCAATCACCGAAGGGGAAGTTGTGGTTGGACAAGTAGTGAAAGGAGCCC
AAAGGAAGCAAGTTGACAAACCAATTTTATAATTTCTTTCTTTTCAGGAGGAGTGAAGCAGAAAA
ATGCAACAGTAGATGGAAAGAACCGAAGAGTTCGTCAAGACATTGGCAACTTTGTCAATGAACAA
GCAGCAACACAAGGGAAGGTAGTTTCAGTAAACACAAAAATATTTCTTTTTCATTAGAGTAGCAA
ATATTAGGCAATCACTAATTGCACTTGGTTATTTTTGCTTGTAGAAACCAATCACCGAAGGGGCT
GTTGTGGTTGCACAAGCTGTGAAAGGAGCTCAAAGGAAGCAAGTTGACAAACCATTTTTATACTT
TCTTTGTTTATAAGGAGAAGTGAAGCAGAAAAATGCAATAGCAGATGGAAGGAACC
Found at i:1980 original size:156 final size:154
Alignment explanation
Indices: 1689--2003 Score: 486
Period size: 156 Copynumber: 2.0 Consensus size: 154
1679 TGGAAGGAAG
* * * * * *
1689 TGAAGGGTTCTTCAAGTCTTGTAACATTGTGAATGAAAGAGCAGCAGCACAAGGGAAGGTAGTTA
1 TGAAGAGTTCTTCAAGGCTTGCAACATTGTCAATGAAAGAACAGCAGCACAAAGGAAGGTAGTTA
* * *
1754 ACATAAAAATGTTTCGTTTTAATTGTAGTAGCAAATATTAGGCGATCACTAATTGCTCTTTGTGT
66 ACAAAAAAATGTTTCGTTTTAATTGTAGTAACAAATATTAGGCAATCACTAATTGCTCTTTGTGT
1819 CTTTTTCTTGTACAAACCAATCAC
131 CTTTTTCTTGTACAAACCAATCAC
*
1843 TGAAGAGTTCTTCAAGGCATTGGCAACATTGTCAATGAACGAACAGCAGCACAAAGGAAGGTAGT
1 TGAAGAGTTCTTCAAGGC-TT-GCAACATTGTCAATGAAAGAACAGCAGCACAAAGGAAGGTAGT
*
1908 TAACAAAAAAATGTTTCGTTTTAATTGTAGTAACAAATATTAGGCAATCTCTAATTGCTCTTTGT
64 TAACAAAAAAATGTTTCGTTTTAATTGTAGTAACAAATATTAGGCAATCACTAATTGCTCTTTGT
* * *
1973 GTTTTTTTCTTGTAGAAACCAATCTC
129 GTCTTTTTCTTGTACAAACCAATCAC
1999 TGAAG
1 TGAAG
2004 GGGCTGTTGT
Statistics
Matches: 145, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
154 16 0.11
155 2 0.01
156 127 0.88
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (154 bp):
TGAAGAGTTCTTCAAGGCTTGCAACATTGTCAATGAAAGAACAGCAGCACAAAGGAAGGTAGTTA
ACAAAAAAATGTTTCGTTTTAATTGTAGTAACAAATATTAGGCAATCACTAATTGCTCTTTGTGT
CTTTTTCTTGTACAAACCAATCAC
Found at i:2387 original size:291 final size:284
Alignment explanation
Indices: 1845--2573 Score: 953
Period size: 291 Copynumber: 2.5 Consensus size: 284
1835 CCAATCACTG
* *
1845 AAGAGTTCTTCAAGGCATTGGCAACATTGTCAATGAACGAACAGCAGCACAA-AGGAAGGTAGTT
1 AAGAATTCTTCAAGACATTGGCAACATTGTCAATGAACGAACAGCAGCACAAGA-GAAGGTAGTT
* * * *
1909 AACAAAAAAATGTTTCGTTTTAATTGTAGTAACAAATATTAGGCAATCTCTAATTGCTCTTTGTG
65 AACACAAAAATGTTTCGTTTTAATTGTAGTGA-AAATATTAGGCAATCACTAATTGCACTTTGTG
* *
1974 TTTTTTTCTTGTAGAAACCAATCTCTGAAGGGGCTGTTGTGGTTGCACAAGCTGTGAAAGGAGCT
129 TTTTTTTCTTGTAGAAACCAATCACCGAAGGGGCTGTTGTGGTTGCACAAGCTGTGAAAGGAGCT
2039 CAAAGGAAGCAAGTTGACAAACCATTTTTATACTTTCTTATTTTTCAGGACAAGTGAAACAGAAA
194 CAAAGGAAGCAAGTTGACAAACCATTTTTATACTTTCTTATTTTTCAGGACAAGTGAAACAGAAA
*
2104 AATGCAACAGCAGATGGAAGGAACCA
259 AATGCAACAGCAGATGGAAAGAACCA
* * * * * *
2130 AATAATTTTTCAAGACTTTGGCAACTTTGTCAATGAAAGACCAGCAGCACAAGAGAAGGTAGTTG
1 AAGAATTCTTCAAGACATTGGCAACATTGTCAATGAACGAACAGCAGCACAAGAGAAGGTAG-T-
* * * *
2195 CAGTATACACAAAAATGTTTCTTTTTCATTATGGTCGAAAATATTAGGCAATCACTAATTGCACT
64 ---TA-ACACAAAAATGTTTCGTTTTAATTGTAGT-GAAAATATTAGGCAATCACTAATTGCACT
*
2260 TTGTGTTTTTTGCTTGTAGAAACCAATCACCGAAGGGGCTGTTGTGGTTGCACAAGCTGTGAAAG
124 TTGTGTTTTTTTCTTGTAGAAACCAATCACCGAAGGGGCTGTTGTGGTTGCACAAGCTGTGAAAG
* * * *
2325 GAGC-CTAAAGGAAGCAAGTTGTCAGATCATTTTTATACTTTCTT-TGTTTAT-AGGAGAAGTGA
189 GAGCTC-AAAGGAAGCAAGTTGACAAACCATTTTTATACTTTCTTAT-TTT-TCAGGACAAGTGA
* * * **
2387 AGCATAAAAATGCAATAGCAGATGGAAAGAACTG
251 AACAGAAAAATGCAACAGCAGATGGAAAGAACCA
** * *
2421 AAGGGTTCTTCAAGACATTGGCAACATTGTCAATGAACGAGCAGCAGCACAAGGGAAGGTAGTTA
1 AAGAATTCTTCAAGACATTGGCAACATTGTCAATGAACGAACAGCAGCACAAGAGAAGGTAGTTA
* * * * * *
2486 ACACAAATATTTTTCGTTTTAATTGTCGTAGCAAATATTAGGCGATCACTAATTGCCCTTTGTGT
66 ACACAAAAATGTTTCGTTTTAATTGTAGT-GAAAATATTAGGCAATCACTAATTGCACTTTGTGT
*
2551 TTTTTTCTTGTACAAACCAATCA
130 TTTTTTCTTGTAGAAACCAATCA
Statistics
Matches: 383, Mismatches: 50, Indels: 22
0.84 0.11 0.05
Matches are distributed among these distances:
285 128 0.33
286 4 0.01
290 5 0.01
291 244 0.64
292 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.30
Consensus pattern (284 bp):
AAGAATTCTTCAAGACATTGGCAACATTGTCAATGAACGAACAGCAGCACAAGAGAAGGTAGTTA
ACACAAAAATGTTTCGTTTTAATTGTAGTGAAAATATTAGGCAATCACTAATTGCACTTTGTGTT
TTTTTCTTGTAGAAACCAATCACCGAAGGGGCTGTTGTGGTTGCACAAGCTGTGAAAGGAGCTCA
AAGGAAGCAAGTTGACAAACCATTTTTATACTTTCTTATTTTTCAGGACAAGTGAAACAGAAAAA
TGCAACAGCAGATGGAAAGAACCA
Done.