Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003879.1 Kokia drynarioides strain JFW-HI SEQ_116914, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3508
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33


Found at i:2658 original size:4 final size:4

Alignment explanation


    Indices: 2649--2692  Score: 70
    Period size: 4  Copynumber: 11.0  Consensus size: 4

       2639 TATGAGTATT

                                      *    *                      
       2649 CATA CATA CATA CATA CATA CTTA CTTA CATA CATA CATA CATA
          1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA

       2693 TATCAAGTTA


Statistics
Matches: 38,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   4   38  1.00

ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30


Consensus pattern (4 bp):   
CATA

Found at i:3312 original size:2 final size:2

Alignment explanation


    Indices: 3305--3331  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

       3295 AAAGTCGCTT

                                                    
       3305 TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA T

       3332 TCAGTTAGCT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.