Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003881.1 Kokia drynarioides strain JFW-HI SEQ_116917, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3142
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34


Found at i:1006 original size:16 final size:16

Alignment explanation


    Indices: 987--1054  Score: 59
    Period size: 16  Copynumber: 4.2  Consensus size: 16

        977 GTGAATAACG

                            
        987 AAAAATAAATAAAAAC
          1 AAAAATAAATAAAAAC

                *            
       1003 AAAACT-AATAAAACAC
          1 AAAAATAAATAAAA-AC

            *          *    
       1019 CAAAATAAATAGAAA-
          1 AAAAATAAATAAAAAC

              *               
       1034 AACAATGAAATATAAAAC
          1 AAAAAT-AAATA-AAAAC

               
       1052 AAA
          1 AAA

       1055 TACAAAAAAA


Statistics
Matches: 39,  Mismatches: 8, Indels: 8
        0.71            0.15        0.15

Matches are distributed among these distances:
  15   11  0.28
  16   17  0.44
  17    9  0.23
  18    2  0.05

ACGTcount: A:0.74, C:0.10, G:0.03, T:0.13


Consensus pattern (16 bp):   
AAAAATAAATAAAAAC
Done.