Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003884.1 Kokia drynarioides strain JFW-HI SEQ_116926, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5852
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.34


Found at i:4714 original size:15 final size:15

Alignment explanation


    Indices: 4694--4724  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       4684 TCCCCAGTAC

                           
       4694 ATTGTAACTCTTCAA
          1 ATTGTAACTCTTCAA

                           
       4709 ATTGTAACTCTTCAA
          1 ATTGTAACTCTTCAA

             
       4724 A
          1 A

       4725 CACTCTCTGA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.35, C:0.19, G:0.06, T:0.39


Consensus pattern (15 bp):   
ATTGTAACTCTTCAA
Done.