Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003888.1 Kokia drynarioides strain JFW-HI SEQ_116937, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 617

Length: 1029
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38


Found at i:105 original size:25 final size:25

Alignment explanation


    Indices: 77--301  Score: 209
    Period size: 25  Copynumber: 9.0  Consensus size: 25

         67 ATACGATAAA

                             *       
         77 GATATTCTATCTGGCTCATAAGAGC
          1 GATATTCTATCTGGCTCGTAAGAGC

                  * *        *       
        102 GATATTTTGTCTGGCTCATAAGAGC
          1 GATATTCTATCTGGCTCGTAAGAGC

                  * *        *      *
        127 GATATTTTGTCTGGCTCATAAGAGT
          1 GATATTCTATCTGGCTCGTAAGAGC

                    *   *   *       *
        152 GATATTCTGTCTAGCTTGTAAGAGA
          1 GATATTCTATCTGGCTCGTAAGAGC

                        *   *        
        177 GATATTCTATCTAGCTTGTAAGAGC
          1 GATATTCTATCTGGCTCGTAAGAGC

                  * * *             *
        202 GATATTTTTTTTGGCTCGTAAGAGT
          1 GATATTCTATCTGGCTCGTAAGAGC

                    *          *     
        227 GATATT-TTTCTGGCTCGTGAGAGC
          1 GATATTCTATCTGGCTCGTAAGAGC

                            *       *
        251 GATATTCTATCTGGCTTGTAAGAGT
          1 GATATTCTATCTGGCTCGTAAGAGC

             *          *       *     
        276 GTTATTCTATCAGGGCTCGTTAGAGC
          1 GATATTCTATC-TGGCTCGTAAGAGC

        302 TTTATTCTGG


Statistics
Matches: 170,  Mismatches: 28, Indels: 3
        0.85            0.14        0.01

Matches are distributed among these distances:
  24   21  0.12
  25  139  0.82
  26   10  0.06

ACGTcount: A:0.24, C:0.15, G:0.24, T:0.38


Consensus pattern (25 bp):   
GATATTCTATCTGGCTCGTAAGAGC

Done.