Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003895.1 Kokia drynarioides strain JFW-HI SEQ_116945, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 757

Length: 1263
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35


Found at i:539 original size:35 final size:35

Alignment explanation


    Indices: 500--568  Score: 111
    Period size: 35  Copynumber: 2.0  Consensus size: 35

        490 AGAATATGAA

                 *             *     *         
        500 AGGTTGAGGAAGATGGAAGGTTAAAGGTCAAGGAG
          1 AGGTTAAGGAAGATGGAAGATTAAAAGTCAAGGAG

                                              
        535 AGGTTAAGGAAGATGGAAGATTAAAAGTCAAGGA
          1 AGGTTAAGGAAGATGGAAGATTAAAAGTCAAGGA

        569 AGATGAAAGG


Statistics
Matches: 31,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  35   31  1.00

ACGTcount: A:0.42, C:0.03, G:0.38, T:0.17


Consensus pattern (35 bp):   
AGGTTAAGGAAGATGGAAGATTAAAAGTCAAGGAG
Done.