Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003898.1 Kokia drynarioides strain JFW-HI SEQ_116951, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3237
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30


Found at i:853 original size:75 final size:75

Alignment explanation


    Indices: 745--897  Score: 306
    Period size: 75  Copynumber: 2.0  Consensus size: 75

        735 TCACTTCCAC

                                                                             
        745 TTAAGAGGTGTAGTAGAACACTTATGCAATGCATAAGAAAAAAAATCATATGTCATAGCAACATT
          1 TTAAGAGGTGTAGTAGAACACTTATGCAATGCATAAGAAAAAAAATCATATGTCATAGCAACATT

                      
        810 AATACGAACA
         66 AATACGAACA

                                                                             
        820 TTAAGAGGTGTAGTAGAACACTTATGCAATGCATAAGAAAAAAAATCATATGTCATAGCAACATT
          1 TTAAGAGGTGTAGTAGAACACTTATGCAATGCATAAGAAAAAAAATCATATGTCATAGCAACATT

                      
        885 AATACGAACA
         66 AATACGAACA

               
        895 TTA
          1 TTA

        898 TTAACAAAGC


Statistics
Matches: 78,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  75   78  1.00

ACGTcount: A:0.46, C:0.13, G:0.16, T:0.25


Consensus pattern (75 bp):   
TTAAGAGGTGTAGTAGAACACTTATGCAATGCATAAGAAAAAAAATCATATGTCATAGCAACATT
AATACGAACA
Done.