Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000039.1 Kokia drynarioides strain JFW-HI SEQ_61356, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3010
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34


Found at i:1236 original size:14 final size:15

Alignment explanation


    Indices: 1217--1252  Score: 56
    Period size: 15  Copynumber: 2.5  Consensus size: 15

       1207 AATATCATTT

                           
       1217 TAATTTT-TTAAAAA
          1 TAATTTTCTTAAAAA

                        *  
       1231 TAATTTTCTTAATAA
          1 TAATTTTCTTAAAAA

                   
       1246 TAATTTT
          1 TAATTTT

       1253 AAAAAATTTA


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  14    7  0.35
  15   13  0.65

ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56


Consensus pattern (15 bp):   
TAATTTTCTTAAAAA

Found at i:2222 original size:27 final size:23

Alignment explanation


    Indices: 2192--2247  Score: 112
    Period size: 23  Copynumber: 2.4  Consensus size: 23

       2182 TATAACGGCT

                                   
       2192 AATAAATAAAGTCGACAAAAGAA
          1 AATAAATAAAGTCGACAAAAGAA

                                   
       2215 AATAAATAAAGTCGACAAAAGAA
          1 AATAAATAAAGTCGACAAAAGAA

                      
       2238 AATAAATAAA
          1 AATAAATAAA

       2248 ATTGTGTGAA


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   33  1.00

ACGTcount: A:0.68, C:0.07, G:0.11, T:0.14


Consensus pattern (23 bp):   
AATAAATAAAGTCGACAAAAGAA
Done.