Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003902.1 Kokia drynarioides strain JFW-HI SEQ_116962, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2147
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.35

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:397 original size:205 final size:205

Alignment explanation


    Indices: 2--559  Score: 866
    Period size: 205  Copynumber: 2.7  Consensus size: 205

          1 C

                *                   *             *           *        *     
          2 GTATTTCATCAGGAAGCTAACCTTGTATTGCTTCGA-CTTGCTTCTCAGTGTCTCATCAAGAAGC
          1 GTATCTCATCAGGAAGCTAACCTTTTATTGCTTC-ACCCTGCTTCTCAGTATCTCATCAGGAAGC

                *                     *                           *   *    * 
         66 TGGGGTTCGAAGATTTGCTCACATCGAGCGTGGGTTTGATTTTGGTCTTCTTCTTAGTGTCTCGT
         65 TGGGATTCGAAGATTTGCTCACATCGGGCGTGGGTTTGA-TTTGGTCTTCTTCTCAGTATCTCAT

                        *  *                                                 
        131 CAGGAAGATGACAGCATCGTTTCTTTCAATTCGCTTCTCTGTATCTCATCAGGAAGACGAATTTG
        129 CAGGAAGATGACCGCGTCGTTTCTTTCAATTCGCTTCTCTGTATCTCATCAGGAAGACGAATTTG

                        
        196 GTCCACTTCTCA
        194 GTCCACTTCTCA

                     *                 *                            *        
        208 GTATCTCATTAGGAAGCTAACCTTTTACTGCTTCACCCTGCTTCTCAGTATCTCATTAGGAAGCT
          1 GTATCTCATCAGGAAGCTAACCTTTTATTGCTTCACCCTGCTTCTCAGTATCTCATCAGGAAGCT

                             *     *                                         
        273 GGGATTCGAAGATTTGCACACATAGGGCGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCATCA
         66 GGGATTCGAAGATTTGCTCACATCGGGCGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCATCA

            *                   *                                            
        338 NGAAGATGACCGCGTCGTTTGTTTCAATTCGCTTCTCTGTATCTCATCAGGAAGACGAATTTGGT
        131 GGAAGATGACCGCGTCGTTTCTTTCAATTCGCTTCTCTGTATCTCATCAGGAAGACGAATTTGGT

                      
        403 CCACTTCTCA
        196 CCACTTCTCA

                        *                     *     *      *                 
        413 GTATCTCATCAGTAAGCTAACCTTTTATTGCTTCGCCCTGTTTCTCAATATCTCATCAGGAAGCT
          1 GTATCTCATCAGGAAGCTAACCTTTTATTGCTTCACCCTGCTTCTCAGTATCTCATCAGGAAGCT

                                        *                               *    
        478 GGGATTCGAAGATTTGCTCACATCGGGCATGGGTTTGATTTGGTCTTCTTCTCAGTATCTTATCA
         66 GGGATTCGAAGATTTGCTCACATCGGGCGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCATCA

                             
        543 GGAAGATGACCGCGTCG
        131 GGAAGATGACCGCGTCG

        560 CTGTTTGTGG


Statistics
Matches: 320,  Mismatches: 31, Indels: 3
        0.90            0.09        0.01

Matches are distributed among these distances:
 205  231  0.72
 206   89  0.28

ACGTcount: A:0.21, C:0.22, G:0.21, T:0.35


Consensus pattern (205 bp):   
GTATCTCATCAGGAAGCTAACCTTTTATTGCTTCACCCTGCTTCTCAGTATCTCATCAGGAAGCT
GGGATTCGAAGATTTGCTCACATCGGGCGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCATCA
GGAAGATGACCGCGTCGTTTCTTTCAATTCGCTTCTCTGTATCTCATCAGGAAGACGAATTTGGT
CCACTTCTCA
Done.