Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000391.1 Kokia drynarioides strain JFW-HI SEQ_111199, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 811

Length: 1353
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.30


Found at i:1069 original size:27 final size:27

Alignment explanation


    Indices: 1033--1089  Score: 96
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       1023 AAATTTAAAA

                 *     *               
       1033 TTTAATTTATTTTAAGTTTAAATTTAT
          1 TTTAACTTATTCTAAGTTTAAATTTAT

                                       
       1060 TTTAACTTATTCTAAGTTTAAATTTAT
          1 TTTAACTTATTCTAAGTTTAAATTTAT

               
       1087 TTT
          1 TTT

       1090 GAATTTAAAT


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.32, C:0.04, G:0.04, T:0.61


Consensus pattern (27 bp):   
TTTAACTTATTCTAAGTTTAAATTTAT

Found at i:1132 original size:14 final size:14

Alignment explanation


    Indices: 1109--1150  Score: 50
    Period size: 14  Copynumber: 3.1  Consensus size: 14

       1099 TTTAAAGTTT

                 *        
       1109 AATTAAAAGTCCAA
          1 AATTACAAGTCCAA

                          
       1123 AATTACAAGTCC-A
          1 AATTACAAGTCCAA

               *    *     
       1136 AATCACAAATCCAA
          1 AATTACAAGTCCAA

             
       1150 A
          1 A

       1151 TTTATTTTAC


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  13   11  0.46
  14   13  0.54

ACGTcount: A:0.55, C:0.21, G:0.05, T:0.19


Consensus pattern (14 bp):   
AATTACAAGTCCAA
Done.