Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01003910.1 Kokia drynarioides strain JFW-HI SEQ_116974, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 94926
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Found at i:455 original size:32 final size:31
Alignment explanation
Indices: 415--485 Score: 108
Period size: 32 Copynumber: 2.3 Consensus size: 31
405 CTTAAAAATA
415 TTTAAATTAAAAT-ATAAAAACAAAAGATAAT
1 TTTAAATT-AAATCATAAAAACAAAAGATAAT
*
446 TTCTAAATTAAATCCTAAAAACAAAAGATAAT
1 TT-TAAATTAAATCATAAAAACAAAAGATAAT
478 TTTAAATT
1 TTTAAATT
486 TTAAATTTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
31 12 0.32
32 25 0.68
ACGTcount: A:0.58, C:0.07, G:0.03, T:0.32
Consensus pattern (31 bp):
TTTAAATTAAATCATAAAAACAAAAGATAAT
Found at i:4658 original size:27 final size:27
Alignment explanation
Indices: 4628--4699 Score: 110
Period size: 27 Copynumber: 2.7 Consensus size: 27
4618 GGTGCTTATG
4628 AGGTAGG-CGATACCAGTGGTGTCATAT
1 AGGTAGGTCGA-ACCAGTGGTGTCATAT
*
4655 AGGTAGGTGGAACCAGTGGTGTCATAT
1 AGGTAGGTCGAACCAGTGGTGTCATAT
*
4682 AGGTAGGTGGAACCAGTG
1 AGGTAGGTCGAACCAGTG
4700 ATGCCATGCA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
27 41 0.95
28 2 0.05
ACGTcount: A:0.26, C:0.12, G:0.38, T:0.24
Consensus pattern (27 bp):
AGGTAGGTCGAACCAGTGGTGTCATAT
Found at i:4715 original size:27 final size:27
Alignment explanation
Indices: 4639--4715 Score: 73
Period size: 27 Copynumber: 2.9 Consensus size: 27
4629 GGTAGGCGAT
* * * *
4639 ACCAGTGGTGTCATATAGGTAGGTGGA
1 ACCAGTGATGCCATACAGATAGGTGGA
* * * *
4666 ACCAGTGGTGTCATATAGGTAGGTGGA
1 ACCAGTGATGCCATACAGATAGGTGGA
*
4693 ACCAGTGATGCCATGCAGATAGG
1 ACCAGTGATGCCATACAGATAGG
4716 CATATATCAG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.27, C:0.14, G:0.35, T:0.23
Consensus pattern (27 bp):
ACCAGTGATGCCATACAGATAGGTGGA
Found at i:5671 original size:17 final size:20
Alignment explanation
Indices: 5635--5686 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 20
5625 TAGAAACTTT
*
5635 TATAAAATAA-ATCAAAAACA
1 TATAAAATAATAT-AATAACA
5655 -A-AAAA-AATATAATAACA
1 TATAAAATAATATAATAACA
5672 TATAAAATAATATAA
1 TATAAAATAATATAA
5687 ATACTATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
17 8 0.30
18 7 0.26
19 5 0.19
20 7 0.26
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (20 bp):
TATAAAATAATATAATAACA
Found at i:6422 original size:19 final size:19
Alignment explanation
Indices: 6395--6434 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
6385 ATTTAAGAAG
6395 TATTATTTAATATTTTA-TA
1 TATTATTTAAT-TTTTAGTA
*
6414 TATTTTTTAATTTTTAGTA
1 TATTATTTAATTTTTAGTA
6433 TA
1 TA
6435 AGATAATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (19 bp):
TATTATTTAATTTTTAGTA
Found at i:26372 original size:33 final size:34
Alignment explanation
Indices: 26312--26375 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
26302 ACAGTATAGA
26312 AGTTATGTCTATACGAAGAGACATCTATTTGACC
1 AGTTATGTCTATACGAAGAGACATCTATTTGACC
*
26346 AGTTATGTCTATATGAA-AGACATCTATTTG
1 AGTTATGTCTATACGAAGAGACATCTATTTG
26376 GACTGTAATG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 13 0.45
34 16 0.55
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (34 bp):
AGTTATGTCTATACGAAGAGACATCTATTTGACC
Found at i:49466 original size:82 final size:82
Alignment explanation
Indices: 49304--49466 Score: 200
Period size: 82 Copynumber: 2.0 Consensus size: 82
49294 AGATCAAATT
* ** * * * ** *
49304 ATGTTAGAGATTAAAGTATAACGATTAAATCTCAAATTTAAGCATATTAGATTGATCAAAAGTAA
1 ATGTTAGAAATTAAAACATAACGATTAAATATCAAATTTAAACATATTAAAAAGACCAAAAGTAA
* *
49369 AAACTAATCATTTTTAC
66 AAACTAACCACTTTTAC
* *
49386 ATGTTAGAAATTAAAACATAAGGATTAAATATCAAATTTAAACATATTAAAAAGACCAAAATTAA
1 ATGTTAGAAATTAAAACATAACGATTAAATATCAAATTTAAACATATTAAAAAGACCAAAAGTAA
*
49451 AAATTAACCACTTTTA
66 AAACTAACCACTTTTA
49467 TAAAATGTAA
Statistics
Matches: 67, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
82 67 1.00
ACGTcount: A:0.50, C:0.10, G:0.09, T:0.32
Consensus pattern (82 bp):
ATGTTAGAAATTAAAACATAACGATTAAATATCAAATTTAAACATATTAAAAAGACCAAAAGTAA
AAACTAACCACTTTTAC
Found at i:51025 original size:18 final size:18
Alignment explanation
Indices: 50998--51047 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
50988 GACGAAAACT
*
50998 TGCCATAAGGCAGAAGCA
1 TGCCACAAGGCAGAAGCA
51016 TGCCACAAGGCAGAAGCA
1 TGCCACAAGGCAGAAGCA
51034 TGCCACAAGGCAGA
1 TGCCACAAGGCAGA
51048 GGAAAAGTGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.38, C:0.26, G:0.28, T:0.08
Consensus pattern (18 bp):
TGCCACAAGGCAGAAGCA
Found at i:51750 original size:18 final size:18
Alignment explanation
Indices: 51724--51758 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51714 TTGATTAACT
*
51724 GATCAATTAACCTAATTC
1 GATCAATTAACCGAATTC
*
51742 GATCTATTAACCGAATT
1 GATCAATTAACCGAATT
51759 AATTCAATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (18 bp):
GATCAATTAACCGAATTC
Found at i:52032 original size:18 final size:17
Alignment explanation
Indices: 52009--52047 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
51999 ATACTTCAAA
*
52009 ATTATAATTATTATATTT
1 ATTATAAATATT-TATTT
52027 ATTATAAATATTTATTT
1 ATTATAAATATTTATTT
52044 ATTA
1 ATTA
52048 ATATATTACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTATAAATATTTATTT
Found at i:52252 original size:16 final size:16
Alignment explanation
Indices: 52231--52263 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
52221 ACCTAAAAAC
*
52231 TATTAAATATTAAATT
1 TATTAAAGATTAAATT
52247 TATTAAAGATTAAATT
1 TATTAAAGATTAAATT
52263 T
1 T
52264 TATAACAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (16 bp):
TATTAAAGATTAAATT
Found at i:52369 original size:24 final size:24
Alignment explanation
Indices: 52336--52386 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
52326 AGAAATAATC
*
52336 TTTCAGTTAAACTATGTTTATTTG
1 TTTCAATTAAACTATGTTTATTTG
52360 TTTCAATTAAACTATGTTTATTTG
1 TTTCAATTAAACTATGTTTATTTG
52384 TTT
1 TTT
52387 GAACCAAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.25, C:0.08, G:0.10, T:0.57
Consensus pattern (24 bp):
TTTCAATTAAACTATGTTTATTTG
Found at i:52395 original size:24 final size:24
Alignment explanation
Indices: 52344--52396 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
52334 TCTTTCAGTT
**
52344 AAACTATGTTTATTTGTTTCAATT
1 AAACTATGTTTATTTGTTTCAACC
*
52368 AAACTATGTTTATTTGTTTGAACC
1 AAACTATGTTTATTTGTTTCAACC
52392 AAACT
1 AAACT
52397 CTTATTAGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.32, C:0.11, G:0.09, T:0.47
Consensus pattern (24 bp):
AAACTATGTTTATTTGTTTCAACC
Found at i:56642 original size:21 final size:21
Alignment explanation
Indices: 56618--56661 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
56608 TATTATAATT
56618 ATACACTGGACTTAATGTTGA
1 ATACACTGGACTTAATGTTGA
56639 ATACACTGGACTTAATGTTGA
1 ATACACTGGACTTAATGTTGA
56660 AT
1 AT
56662 TTTTGACATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (21 bp):
ATACACTGGACTTAATGTTGA
Found at i:66247 original size:121 final size:121
Alignment explanation
Indices: 66033--66276 Score: 443
Period size: 121 Copynumber: 2.0 Consensus size: 121
66023 ATGGGTGGAA
*
66033 ATAAAGGAAGCCATGTAAGAAAAATAGGGGTGTGGATGCGAATTACTGATTGGACTTAACAACTT
1 ATAAAGGAAGCCATGTAAGAAAAATAGGGGTGTGGATGCGAATTACTGATTAGACTTAACAACTT
66098 TATGGGAGGCTAACCCCACGTGAGAAATTGGGGATTAAACCTAGTAGTATGTCGTG
66 TATGGGAGGCTAACCCCACGTGAGAAATTGGGGATTAAACCTAGTAGTATGTCGTG
* *
66154 ATAAAGGAAGCCCTGTAAGAAAAATAGGGGTGTGGATGTGAATTACTGATTAGACTTAACAACTT
1 ATAAAGGAAGCCATGTAAGAAAAATAGGGGTGTGGATGCGAATTACTGATTAGACTTAACAACTT
* *
66219 TATGGGAGGCTAACCCCGCGTGAGAAATTGGGGATTAAACCTAGTAGTATTTCGTG
66 TATGGGAGGCTAACCCCACGTGAGAAATTGGGGATTAAACCTAGTAGTATGTCGTG
66275 AT
1 AT
66277 TTCATATCAC
Statistics
Matches: 118, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
121 118 1.00
ACGTcount: A:0.34, C:0.13, G:0.27, T:0.26
Consensus pattern (121 bp):
ATAAAGGAAGCCATGTAAGAAAAATAGGGGTGTGGATGCGAATTACTGATTAGACTTAACAACTT
TATGGGAGGCTAACCCCACGTGAGAAATTGGGGATTAAACCTAGTAGTATGTCGTG
Found at i:67756 original size:18 final size:20
Alignment explanation
Indices: 67705--67761 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 20
67695 TTAGATTTTT
67705 TTTTTAAATATATAAATTTGGAA
1 TTTTTAAA-A-AT-AATTTGGAA
*
67728 TTTTTATAAATAATTT-GAA
1 TTTTTAAAAATAATTTGGAA
*
67747 -TTTTAAAAATTATTT
1 TTTTTAAAAATAATTT
67762 TTATTTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 13 0.42
19 3 0.10
20 5 0.16
21 2 0.06
22 1 0.03
23 7 0.23
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (20 bp):
TTTTTAAAAATAATTTGGAA
Found at i:69245 original size:20 final size:18
Alignment explanation
Indices: 69206--69241 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
69196 CCATCAAAAA
69206 TAAAATATATATTTAAAT
1 TAAAATATATATTTAAAT
*
69224 TAAACTATATATTTAAAT
1 TAAAATATATATTTAAAT
69242 ATTATATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (18 bp):
TAAAATATATATTTAAAT
Found at i:69444 original size:22 final size:22
Alignment explanation
Indices: 69412--69454 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
69402 CAAAAAATTT
*
69412 TAAATTTTTAAAAAATAAAAAA
1 TAAATTATTAAAAAATAAAAAA
*
69434 TAAATTATTAAAAAATTAAAA
1 TAAATTATTAAAAAATAAAAA
69455 TATATAGGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAATTATTAAAAAATAAAAAA
Found at i:69730 original size:15 final size:15
Alignment explanation
Indices: 69710--69744 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
69700 TGGCACGTTG
69710 ATGGCGCCATATTAT
1 ATGGCGCCATATTAT
*
69725 ATGGCGTCATATTAT
1 ATGGCGCCATATTAT
69740 ATGGC
1 ATGGC
69745 TCCACCAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (15 bp):
ATGGCGCCATATTAT
Found at i:70357 original size:21 final size:22
Alignment explanation
Indices: 70327--70368 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
70317 TATTGGTTTG
*
70327 AAAAAAAAAAGTAA-TTATTTC
1 AAAAAAAAAAATAATTTATTTC
*
70348 AAAAATAAAAATAATTTATTT
1 AAAAAAAAAAATAATTTATTT
70369 GTGCTTTCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAAAAAAAAATAATTTATTTC
Found at i:70357 original size:22 final size:21
Alignment explanation
Indices: 70327--70368 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
70317 TATTGGTTTG
70327 AAAAAAAAAAGTAA-TTATTTC
1 AAAAAAAAAA-TAATTTATTTC
70348 AAAAATAAAAATAATTTATTT
1 AAAAA-AAAAATAATTTATTT
70369 GTGCTTTCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (21 bp):
AAAAAAAAAATAATTTATTTC
Found at i:71241 original size:21 final size:20
Alignment explanation
Indices: 71202--71241 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
71192 GACAAAGTGA
**
71202 AGATAAAAAAAGTATTTATG
1 AGATAAAAAAAACATTTATG
71222 AGATAAAAAAAACATATTAT
1 AGATAAAAAAAACAT-TTAT
71242 CAATTTACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.60, C:0.03, G:0.10, T:0.28
Consensus pattern (20 bp):
AGATAAAAAAAACATTTATG
Found at i:71690 original size:12 final size:12
Alignment explanation
Indices: 71675--71811 Score: 67
Period size: 12 Copynumber: 12.1 Consensus size: 12
71665 ATAACATCCA
*
71675 AACAACAAAAAT
1 AACAACAAAAAC
* *
71687 AACAACCAATAC
1 AACAACAAAAAC
* *
71699 AGCAGCAAAAA-
1 AACAACAAAAAC
*
71710 AACAA-TAAAAC
1 AACAACAAAAAC
**
71721 AAC-A-TTAAA-
1 AACAACAAAAAC
*
71730 AACAACAAAAAT
1 AACAACAAAAAC
*
71742 AGCAACAAAAAC
1 AACAACAAAAAC
*
71754 AACAACAAAAAT
1 AACAACAAAAAC
* *
71766 AAC-ACGAAAAT
1 AACAACAAAAAC
*
71777 AGCAATC-AAAAC
1 AACAA-CAAAAAC
*
71789 AAC-TCAAAAAC
1 AACAACAAAAAC
71800 AACAA-AAAAAC
1 AACAACAAAAAC
71811 A
1 A
71812 TAAACCAAAA
Statistics
Matches: 94, Mismatches: 23, Indels: 17
0.70 0.17 0.13
Matches are distributed among these distances:
9 3 0.03
10 11 0.12
11 33 0.35
12 46 0.49
13 1 0.01
ACGTcount: A:0.69, C:0.20, G:0.04, T:0.07
Consensus pattern (12 bp):
AACAACAAAAAC
Found at i:71750 original size:67 final size:67
Alignment explanation
Indices: 71677--71807 Score: 158
Period size: 67 Copynumber: 2.0 Consensus size: 67
71667 AACATCCAAA
* * * * *
71677 CAACAAAAATAACAACCAATACAGCA-GCAAAAAAACAAT-AAAACAACATTAAAAACAACAAAA
1 CAACAAAAACAACAACAAAAACAACACG-AAAAAAACAATCAAAACAAC-TCAAAAACAACAAAA
71740 ATAG
64 ATAG
* * *
71744 CAACAAAAACAACAACAAAAATAACACGAAAATAGCAATCAAAACAACTCAAAAACAACAAAAA
1 CAACAAAAACAACAACAAAAACAACACGAAAAAAACAATCAAAACAACTCAAAAACAACAAAAA
71808 AACATAAACC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
67 45 0.83
68 9 0.17
ACGTcount: A:0.68, C:0.21, G:0.04, T:0.08
Consensus pattern (67 bp):
CAACAAAAACAACAACAAAAACAACACGAAAAAAACAATCAAAACAACTCAAAAACAACAAAAAT
AG
Found at i:73613 original size:6 final size:6
Alignment explanation
Indices: 73602--73630 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
73592 AGGCAGGCCT
73602 TGCCAC TGCCAC TGCCAC TGCCAC TGCCA
1 TGCCAC TGCCAC TGCCAC TGCCAC TGCCA
73631 GAGATATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.48, G:0.17, T:0.17
Consensus pattern (6 bp):
TGCCAC
Found at i:86211 original size:7 final size:8
Alignment explanation
Indices: 86180--86209 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
86170 TTTATTCCCA
86180 TTTTTTTC
1 TTTTTTTC
86188 TTTTTTTC
1 TTTTTTTC
86196 TTTTTTTC
1 TTTTTTTC
86204 TTTTTT
1 TTTTTT
86210 CTAATTAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (8 bp):
TTTTTTTC
Found at i:86473 original size:16 final size:17
Alignment explanation
Indices: 86449--86482 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
86439 CACAAATTTT
*
86449 TAAATTATAAAATTAAA
1 TAAATTATAAAATAAAA
86466 TAAA-TATAAAATAAAA
1 TAAATTATAAAATAAAA
86482 T
1 T
86483 TTTATTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
TAAATTATAAAATAAAA
Found at i:86698 original size:2 final size:2
Alignment explanation
Indices: 86691--86726 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
86681 AAATATTTTA
86691 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86727 GAAAGGAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.