Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003923.1 Kokia drynarioides strain JFW-HI SEQ_116998, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1964
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1905 original size:17 final size:17

Alignment explanation


    Indices: 1885--1939  Score: 76
    Period size: 17  Copynumber: 3.2  Consensus size: 17

       1875 TAAAACTGAG

                             
       1885 TTTATTATAAATTTAAA
          1 TTTATTATAAATTTAAA

                 *            
       1902 TTTAGCTA-AAATTTAAA
          1 TTTA-TTATAAATTTAAA

                            *
       1919 TTTATTATAAATTTAAT
          1 TTTATTATAAATTTAAA

                
       1936 TTTA
          1 TTTA

       1940 AATGTCCAAA


Statistics
Matches: 33,  Mismatches: 3, Indels: 4
        0.82            0.08        0.10

Matches are distributed among these distances:
  16    2  0.06
  17   29  0.88
  18    2  0.06

ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53


Consensus pattern (17 bp):   
TTTATTATAAATTTAAA
Done.