Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003926.1 Kokia drynarioides strain JFW-HI SEQ_117003, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19571
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:4061 original size:42 final size:41

Alignment explanation


    Indices: 3999--4080  Score: 146
    Period size: 42  Copynumber: 2.0  Consensus size: 41

       3989 TTTAATTGCG

                                                      
       3999 TTTTTTTTTTTTTTTCAAACTAAGATGTTCTCACGCATTCNT
          1 TTTTTTTTTTTTTTTCAAACTAAGATGTTCTCACGCATTC-T

                           *                        
       4041 TTTTTTTTTTTTTTTTAAACTAAGATGTTCTCACGCATTC
          1 TTTTTTTTTTTTTTTCAAACTAAGATGTTCTCACGCATTC

       4081 AACGTGATTA


Statistics
Matches: 39,  Mismatches: 1, Indels: 0
        0.98            0.03        0.00

Matches are distributed among these distances:
  42   39  1.00

ACGTcount: A:0.20, C:0.16, G:0.07, T:0.56


Consensus pattern (41 bp):   
TTTTTTTTTTTTTTTCAAACTAAGATGTTCTCACGCATTCT
Done.