Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000393.1 Kokia drynarioides strain JFW-HI SEQ_111203, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2216
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36


Found at i:1531 original size:14 final size:15

Alignment explanation


    Indices: 1510--1541  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1500 ACATATTTGG

                     *     
       1510 ATTTTTTTATAAATT
          1 ATTTTTTTAAAAATT

                           
       1525 ATTTTTTTAAAAATT
          1 ATTTTTTTAAAAATT

              
       1540 AT
          1 AT

       1542 ATAACTTTTG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62


Consensus pattern (15 bp):   
ATTTTTTTAAAAATT
Done.