Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003931.1 Kokia drynarioides strain JFW-HI SEQ_117013, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6188
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.33


Found at i:2827 original size:40 final size:40

Alignment explanation


    Indices: 2773--2854  Score: 155
    Period size: 40  Copynumber: 2.0  Consensus size: 40

       2763 GATGTATTAA

                                                *   
       2773 TAATATCAAGTCCTTGAAGCTAGAGGATGGTTCGTGGTGT
          1 TAATATCAAGTCCTTGAAGCTAGAGGATGGTTCGTGATGT

                                                    
       2813 TAATATCAAGTCCTTGAAGCTAGAGGATGGTTCGTGATGT
          1 TAATATCAAGTCCTTGAAGCTAGAGGATGGTTCGTGATGT

              
       2853 TA
          1 TA

       2855 TGATGAGGAC


Statistics
Matches: 41,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  40   41  1.00

ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33


Consensus pattern (40 bp):   
TAATATCAAGTCCTTGAAGCTAGAGGATGGTTCGTGATGT

Found at i:6118 original size:39 final size:39

Alignment explanation


    Indices: 6064--6146  Score: 112
    Period size: 39  Copynumber: 2.1  Consensus size: 39

       6054 TTAACTCAGT

                            **     *               
       6064 AAATTTAATAGTTACCGTTTAATGGAGACCAAAATTTTA
          1 AAATTTAATAGTTACCACTTAATAGAGACCAAAATTTTA

                                **       *         
       6103 AAATTTAATAGTTACCACTTGGTAGAGACTAAAATTTTA
          1 AAATTTAATAGTTACCACTTAATAGAGACCAAAATTTTA

                 
       6142 AAATT
          1 AAATT

       6147 CGAATACCAA


Statistics
Matches: 38,  Mismatches: 6, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  39   38  1.00

ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36


Consensus pattern (39 bp):   
AAATTTAATAGTTACCACTTAATAGAGACCAAAATTTTA
Done.