Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01003933.1 Kokia drynarioides strain JFW-HI SEQ_117015, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 34131
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Warning! 15 characters in sequence are not A, C, G, or T
Found at i:11084 original size:19 final size:18
Alignment explanation
Indices: 11052--11098 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
11042 ATCCCAAAAA
11052 AATTTAAATTTTTTTTTT
1 AATTTAAATTTTTTTTTT
* *
11070 AATTTTAATTATTTTTTT
1 AATTTAAATTTTTTTTTT
11088 AAGTTTAAATT
1 AA-TTTAAATT
11099 CATTTGCTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 18 0.72
19 7 0.28
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (18 bp):
AATTTAAATTTTTTTTTT
Found at i:11911 original size:18 final size:18
Alignment explanation
Indices: 11888--11923 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
11878 CGCATAATAT
11888 AATAAACATATT-TAAAAA
1 AATAAACAT-TTATAAAAA
11906 AATAAACATTTATAAAAA
1 AATAAACATTTATAAAAA
11924 TTTAATTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 15 0.88
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.28
Consensus pattern (18 bp):
AATAAACATTTATAAAAA
Found at i:12055 original size:19 final size:21
Alignment explanation
Indices: 12031--12082 Score: 63
Period size: 24 Copynumber: 2.4 Consensus size: 21
12021 CTTGTAGATA
12031 AATATTT-TATT-AATTTAAT
1 AATATTTATATTAAATTTAAT
12050 AATATTTAATATTAAATTTAATCT
1 AATATTT-ATATTAAATTTAA--T
12074 AATATTTAT
1 AATATTTAT
12083 CATGATAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
19 7 0.25
21 4 0.14
22 7 0.25
23 2 0.07
24 8 0.29
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (21 bp):
AATATTTATATTAAATTTAAT
Found at i:14876 original size:30 final size:30
Alignment explanation
Indices: 14842--14901 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
14832 ATGTGTCAAA
* * *
14842 ACAAAACCCATAATTCACCTTAATGGCAAT
1 ACAAAAACCACAATTCACCTCAATGGCAAT
*
14872 ACAAAAACCACAATTCATCTCAATGGCAAT
1 ACAAAAACCACAATTCACCTCAATGGCAAT
14902 GAGTCAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.45, C:0.27, G:0.07, T:0.22
Consensus pattern (30 bp):
ACAAAAACCACAATTCACCTCAATGGCAAT
Found at i:15154 original size:7 final size:7
Alignment explanation
Indices: 15144--15185 Score: 50
Period size: 7 Copynumber: 5.7 Consensus size: 7
15134 AATTAAACCC
15144 AATTTTA
1 AATTTTA
15151 AATTTTA
1 AATTTTA
15158 AATTTTA
1 AATTTTA
15165 ATTCATTTTA
1 A---ATTTTA
15175 AA-TTTA
1 AATTTTA
15181 AATTT
1 AATTT
15186 ATTGTAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
6 6 0.19
7 18 0.58
10 7 0.23
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (7 bp):
AATTTTA
Found at i:15172 original size:17 final size:17
Alignment explanation
Indices: 15152--15246 Score: 82
Period size: 17 Copynumber: 5.5 Consensus size: 17
15142 CCAATTTTAA
*
15152 ATTTTAAATTTTAATTC
1 ATTTTAAATTTAAATTC
*
15169 ATTTTAAATTTAAATTT
1 ATTTTAAATTTAAATTC
* * *
15186 ATTGTAAATTTAAGTTT
1 ATTTTAAATTTAAATTC
**** *
15203 ATTTGGGGTTTAAATTT
1 ATTTTAAATTTAAATTC
*
15220 ATTTTAAATTTAAATTT
1 ATTTTAAATTTAAATTC
15237 ATTTTGAAAT
1 ATTTT-AAAT
15247 AAAAATTTAA
Statistics
Matches: 63, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
17 59 0.94
18 4 0.06
ACGTcount: A:0.36, C:0.01, G:0.07, T:0.56
Consensus pattern (17 bp):
ATTTTAAATTTAAATTC
Found at i:15252 original size:18 final size:17
Alignment explanation
Indices: 15214--15255 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
15204 TTTGGGGTTT
**
15214 AAATTTATTTTAAATTT
1 AAATTTATTTTAAATAA
15231 AAATTTATTTTGAAATAA
1 AAATTTATTTT-AAATAA
15249 AAATTTA
1 AAATTTA
15256 AAATTAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (17 bp):
AAATTTATTTTAAATAA
Found at i:15404 original size:35 final size:35
Alignment explanation
Indices: 15360--15426 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
15350 CCGATTGGGC
*
15360 CCCTTTACAAATGGCCCAAATTAC-CTAAACCCGAA
1 CCCTATACAAATGGCCC-AATTACACTAAACCCGAA
*
15395 CCCTATACAAATGGCCCAATTCCACTAAACCC
1 CCCTATACAAATGGCCCAATTACACTAAACCC
15427 ATTACACCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 5 0.17
35 24 0.83
ACGTcount: A:0.36, C:0.37, G:0.07, T:0.19
Consensus pattern (35 bp):
CCCTATACAAATGGCCCAATTACACTAAACCCGAA
Found at i:16015 original size:6 final size:6
Alignment explanation
Indices: 15998--16080 Score: 51
Period size: 6 Copynumber: 13.7 Consensus size: 6
15988 AATCATTAAC
* * * * * *
15998 AATAAT AGTAAT ATTAAT AATAAT AAGT-AT AATACT AATGAC ATTAATT
1 AATAAT AATAAT AATAAT AATAAT AA-TAAT AATAAT AATAAT AATAA-T
* * * *
16047 AATAAT AATAAT ATTAAG AATATT AATATT AATA
1 AATAAT AATAAT AATAAT AATAAT AATAAT AATA
16081 TTAAATAAAT
Statistics
Matches: 58, Mismatches: 16, Indels: 6
0.73 0.20 0.08
Matches are distributed among these distances:
5 1 0.02
6 52 0.90
7 5 0.09
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.37
Consensus pattern (6 bp):
AATAAT
Found at i:16018 original size:15 final size:15
Alignment explanation
Indices: 15998--16080 Score: 78
Period size: 15 Copynumber: 5.3 Consensus size: 15
15988 AATCATTAAC
*
15998 AATAATAGTAATATT
1 AATAATAATAATATT
16013 AATAATAATAAGTA-T
1 AATAATAATAA-TATT
*
16028 AATACTAATGACATTAATT
1 AATAATAAT-A-A-T-ATT
16047 AATAATAATAATATT
1 AATAATAATAATATT
* *
16062 AAGAATATTAATATT
1 AATAATAATAATATT
16077 AATA
1 AATA
16081 TTAAATAAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
15 38 0.68
16 4 0.07
17 3 0.05
18 2 0.04
19 9 0.16
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.37
Consensus pattern (15 bp):
AATAATAATAATATT
Found at i:17312 original size:30 final size:28
Alignment explanation
Indices: 17193--17505 Score: 109
Period size: 29 Copynumber: 10.7 Consensus size: 28
17183 TAAACTATCT
** *
17193 AAAAATTATATTTTTATCCCCGAA-CTTC
1 AAAAATTCCATTTTTA-CCCCGAATTTTC
* * **
17221 CAAAATTCTATTTTTGACCCTAAATTTTC
1 AAAAATTCCATTTTT-ACCCCGAATTTTC
* * *
17250 AAAAAATT--ATCATTTACCCCCTAATTTCC
1 -AAAAATTCCAT-TTTTA-CCCCGAATTTTC
*
17279 AAAAATTCCATTTTTGACCCCGATTTTTTC
1 AAAAATTCCATTTTT-ACCCCGA-ATTTTC
* * * *
17309 AAAAAATAACCA-TTTTACCCCAAACTTCC
1 -AAAAAT-TCCATTTTTACCCCGAATTTTC
* * ** *
17338 AAAAATTCTAATTTTGACCTTGATTTTTCC
1 AAAAATTC-CATTTTTACCCCGAATTTT-C
* * * *
17368 AAAAATTAC-TATTTTACCATCGAACTTCC
1 AAAAATTCCAT-TTTTACC-CCGAATTTTC
* *
17397 TAAAATTCCATTTTTGACCCCGATTTTTTTCC
1 AAAAATTCCATTTTT-ACCCCGA--ATTTT-C
*
17429 AAAAATTACCA-TTTTACCCTCGAACTTTC
1 AAAAATT-CCATTTTTACCC-CGAATTTTC
* * *
17458 AAAAACTCCATTTTTAACCTCGACTTTTC
1 AAAAATTCCATTTTT-ACCCCGAATTTTC
*
17487 CAAAATTACCA-TTTTACCC
1 AAAAATT-CCATTTTTACCC
17506 TTGAGTATCT
Statistics
Matches: 208, Mismatches: 51, Indels: 52
0.67 0.16 0.17
Matches are distributed among these distances:
27 1 0.00
28 42 0.20
29 84 0.40
30 45 0.22
31 16 0.08
32 17 0.08
33 3 0.01
ACGTcount: A:0.33, C:0.25, G:0.04, T:0.38
Consensus pattern (28 bp):
AAAAATTCCATTTTTACCCCGAATTTTC
Found at i:17338 original size:59 final size:58
Alignment explanation
Indices: 17204--17560 Score: 308
Period size: 59 Copynumber: 6.1 Consensus size: 58
17194 AAAATTATAT
* ** * *
17204 TTTTATCCCCGAACTTCC-AAAATTCTATTTTTGACCCTAAATTTTCAAAAAATTATCA
1 TTTTA-CCCCGAACTTCCAAAAATTCCATTTTTGACCCCGATTTTTCAAAAAATTACCA
* * *
17262 -TTTACCCCCTAATTTCCAAAAATTCCATTTTTGACCCCGATTTTTTCAAAAAATAACCA
1 TTTTA-CCCCGAACTTCCAAAAATTCCATTTTTGACCCCGA-TTTTTCAAAAAATTACCA
* * * ** * *
17321 TTTTACCCCAAACTTCCAAAAATTCTAATTTTGACCTTGATTTTTCCAAAAATTACTA
1 TTTTACCCCGAACTTCCAAAAATTCCATTTTTGACCCCGATTTTTCAAAAAATTACCA
* * *
17379 TTTTACCATCGAACTTCCTAAAATTCCATTTTTGACCCCGATTTTTTTCCAAAAATTACCA
1 TTTTACC-CCGAACTTCCAAAAATTCCATTTTTGACCCCGA--TTTTTCAAAAAATTACCA
* * * * * *
17440 TTTTACCCTCGAACTTTCAAAAACTCCATTTTTAACCTCGACTTTTC-CAAAATTACCA
1 TTTTACCC-CGAACTTCCAAAAATTCCATTTTTGACCCCGATTTTTCAAAAAATTACCA
* * * * * ** **
17498 TTTTACCCTTG-AGTATCTAAAAATTCTATTTTTGACCACGAACTTTCCCAAAATTACCA
1 TTTTACCC-CGAACT-TCCAAAAATTCCATTTTTGACCCCGATTTTTCAAAAAATTACCA
17557 TTTT
1 TTTT
17561 GTCGCCAAAT
Statistics
Matches: 246, Mismatches: 44, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
57 16 0.07
58 85 0.35
59 90 0.37
60 4 0.02
61 51 0.21
ACGTcount: A:0.32, C:0.25, G:0.04, T:0.39
Consensus pattern (58 bp):
TTTTACCCCGAACTTCCAAAAATTCCATTTTTGACCCCGATTTTTCAAAAAATTACCA
Found at i:17486 original size:29 final size:31
Alignment explanation
Indices: 17278--17560 Score: 98
Period size: 29 Copynumber: 9.5 Consensus size: 31
17268 CCCTAATTTC
* * **
17278 CAAAAATT-CCATTTTTGACCCCGATTTTTT
1 CAAAAATTACCATTTTTAACCTCGAACTTTT
* * * *
17308 CAAAAAATAACCA-TTTT-ACCCCAAAC-TTC
1 C-AAAAATTACCATTTTTAACCTCGAACTTTT
* * * * *
17337 CAAAAATT-CTAATTTTGACCTTG-ATTTTT
1 CAAAAATTACCATTTTTAACCTCGAACTTTT
* *
17366 CCAAAAATTACTA-TTTT-ACCATCGAAC-TTC
1 -CAAAAATTACCATTTTTAACC-TCGAACTTTT
* * * **
17396 CTAAAATT-CCATTTTTGACCCCGATTTTTTT
1 CAAAAATTACCATTTTTAACCTCGA-ACTTTT
*
17427 CCAAAAATTACCA-TTTTACCCTCGAAC-TTT
1 -CAAAAATTACCATTTTTAACCTCGAACTTTT
*
17457 CAAAAACT-CCATTTTTAACCTCG-ACTTTT
1 CAAAAATTACCATTTTTAACCTCGAACTTTT
* * * * *
17486 CCAAAATTACCA-TTTTACCCTTG-A-GTAT
1 CAAAAATTACCATTTTTAACCTCGAACTTTT
* * * *
17514 CTAAAAATT-CTATTTTTGACCACGAACTTTC
1 C-AAAAATTACCATTTTTAACCTCGAACTTTT
*
17545 CCAAAATTACCATTTT
1 CAAAAATTACCATTTT
17561 GTCGCCAAAT
Statistics
Matches: 184, Mismatches: 46, Indels: 45
0.67 0.17 0.16
Matches are distributed among these distances:
27 2 0.01
28 23 0.12
29 74 0.40
30 39 0.21
31 24 0.13
32 19 0.10
33 3 0.02
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.38
Consensus pattern (31 bp):
CAAAAATTACCATTTTTAACCTCGAACTTTT
Found at i:17520 original size:58 final size:59
Alignment explanation
Indices: 17362--17560 Score: 188
Period size: 61 Copynumber: 3.3 Consensus size: 59
17352 TGACCTTGAT
* * * * * * **
17362 TTTTCCAAAAATTACTATTTTACCATCGAACT-TCCTAAAATTCCATTTTTGACCCCGATTT
1 TTTTCC-AAAATTACCATTTTACCCTCGAACTAT-CAAAAACTCCATTTTTAACCACGA-AC
* *
17423 TTTTCCAAAAATTACCATTTTACCCTCGAACTTTCAAAAACTCCATTTTTAACCTCG-AC
1 TTTTCC-AAAATTACCATTTTACCCTCGAACTATCAAAAACTCCATTTTTAACCACGAAC
* * * * *
17482 TTTTCCAAAATTACCATTTTACCCTTG-AGTATCTAAAAATTCTATTTTTGACCACGAAC
1 TTTTCCAAAATTACCATTTTACCCTCGAACTATC-AAAAACTCCATTTTTAACCACGAAC
*
17541 TTTCCCAAAATTACCATTTT
1 TTTTCCAAAATTACCATTTT
17561 GTCGCCAAAT
Statistics
Matches: 119, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
57 4 0.03
58 38 0.32
59 27 0.23
61 49 0.41
62 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.05, T:0.39
Consensus pattern (59 bp):
TTTTCCAAAATTACCATTTTACCCTCGAACTATCAAAAACTCCATTTTTAACCACGAAC
Found at i:17521 original size:119 final size:119
Alignment explanation
Indices: 17275--17560 Score: 332
Period size: 119 Copynumber: 2.4 Consensus size: 119
17265 ACCCCCTAAT
* *
17275 TTCC-AAAAATTCCATTTTTGACCCCGATTTTTTCAAAAAATAACCATTTTACCCCAAACTTCCA
1 TTCCTAAAAATTCCATTTTTGACCCCGATTTTTTCCAAAAATTACCATTTTACCCCAAACTTCCA
* * * * * *
17339 AAAATTCTAATTTTGACCTTGATTTTTCCAAAAATTACTATTTTACCATCGAAC
66 AAAACTCCAATTTTAACCTCGACTTTTCCAAAAATTACCATTTTACCATCGAAC
* *
17393 TTCCT-AAAATTCCATTTTTGACCCCGATTTTTTTCCAAAAATTACCATTTTACCCTCGAACTTT
1 TTCCTAAAAATTCCATTTTTGACCCCGA-TTTTTTCCAAAAATTACCATTTTACCC-CAAACTTC
* * * *
17457 CAAAAACTCCATTTTTAACCTCGACTTTTCC-AAAATTACCATTTTACCCTTG-AG
64 CAAAAACTCCAATTTTAACCTCGACTTTTCCAAAAATTACCATTTTACCATCGAAC
* * ** *
17511 TAT-CTAAAAATTCTATTTTTGACCACGA-ACTTTCCCAAAATTACCATTTT
1 T-TCCTAAAAATTCCATTTTTGACCCCGATTTTTTCCAAAAATTACCATTTT
17561 GTCGCCAAAT
Statistics
Matches: 144, Mismatches: 19, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
117 19 0.13
118 30 0.21
119 64 0.44
120 31 0.22
ACGTcount: A:0.32, C:0.25, G:0.05, T:0.38
Consensus pattern (119 bp):
TTCCTAAAAATTCCATTTTTGACCCCGATTTTTTCCAAAAATTACCATTTTACCCCAAACTTCCA
AAAACTCCAATTTTAACCTCGACTTTTCCAAAAATTACCATTTTACCATCGAAC
Found at i:17960 original size:96 final size:97
Alignment explanation
Indices: 17822--18007 Score: 279
Period size: 96 Copynumber: 1.9 Consensus size: 97
17812 AAAAACTTTA
*
17822 AAATCGAGGCAATATTCTTTTATTTCGAGTTTTGAAAATTTGTACCTTAACTTACTAGGTGC-AA
1 AAATCGAGGCAATATTCTTTTATCTCGAGTTTTGAAAATTTGTACCTTAACTTACTAGGTGCGAA
17886 TTTTCCTCAAATCGAAATAATCGAATACCCTT
66 TTTTCCTCAAATCGAAATAATCGAATACCCTT
* *
17918 AAATCGAGGCAATGTT-TCTTTATCTCTGA-TTTTGAAAATTTGTGCCTTAACTTACTAGGTGCG
1 AAATCGAGGCAATATTCT-TTTATCTC-GAGTTTTGAAAATTTGTACCTTAACTTACTAGGTGCG
* * *
17981 ACTTTTCTTCAAATCGAGATAATCGAA
64 AATTTTCCTCAAATCGAAATAATCGAA
18008 CATCCTTTTC
Statistics
Matches: 81, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
95 1 0.01
96 54 0.67
97 26 0.32
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.38
Consensus pattern (97 bp):
AAATCGAGGCAATATTCTTTTATCTCGAGTTTTGAAAATTTGTACCTTAACTTACTAGGTGCGAA
TTTTCCTCAAATCGAAATAATCGAATACCCTT
Found at i:30472 original size:13 final size:13
Alignment explanation
Indices: 30435--30473 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
30425 ACTTGAATTT
*
30435 TTAAATTTGAAAA
1 TTAAATTTTAAAA
*
30448 TATAAATATTAAAA
1 T-TAAATTTTAAAA
30462 TTAAATTTTAAA
1 TTAAATTTTAAA
30474 TGTCCAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (13 bp):
TTAAATTTTAAAA
Found at i:31155 original size:23 final size:22
Alignment explanation
Indices: 31129--31203 Score: 73
Period size: 23 Copynumber: 3.4 Consensus size: 22
31119 TTGCAGGTTG
*
31129 TTTTTGGTGTAGATTTGGTACT
1 TTTTTGGTGTAGATTTGATACT
*
31151 ATTTTTGGTGCT-GATTTGATGCT
1 -TTTTTGGTG-TAGATTTGATACT
* *
31174 TTTTT-ATGCAGATTTGATACT
1 TTTTTGGTGTAGATTTGATACT
31195 GTTTTTGGT
1 -TTTTTGGT
31204 TCTATTTTAG
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
21 12 0.29
22 10 0.24
23 19 0.45
24 1 0.02
ACGTcount: A:0.15, C:0.07, G:0.24, T:0.55
Consensus pattern (22 bp):
TTTTTGGTGTAGATTTGATACT
Found at i:33998 original size:10 final size:10
Alignment explanation
Indices: 33972--34015 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
33962 AATTGAAGGA
33972 AAAAAGAAAG
1 AAAAAGAAAG
33982 --AAA-AAAG
1 AAAAAGAAAG
33989 AAAAAGAAAG
1 AAAAAGAAAG
33999 AAAAAGAAAG
1 AAAAAGAAAG
*
34009 AAGAAGA
1 AAAAAGA
34016 GGAAGAAGGA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
7 4 0.13
8 3 0.10
9 3 0.10
10 20 0.67
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (10 bp):
AAAAAGAAAG
Found at i:34015 original size:16 final size:16
Alignment explanation
Indices: 33972--34013 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 16
33962 AATTGAAGGA
33972 AAAAAGAAAGAAAAAAG
1 AAAAAGAAAG-AAAAAG
33989 AAAAAGAAAGAAAAAG
1 AAAAAGAAAGAAAAAG
34005 AAAGAAGAA
1 AAA-AAGAA
34014 GAGGAAGAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 9 0.38
17 15 0.62
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAGAAAAAG
Done.