Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003936.1 Kokia drynarioides strain JFW-HI SEQ_117018, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 822

Length: 1371
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.23


Found at i:969 original size:18 final size:20

Alignment explanation


    Indices: 942--1009  Score: 63
    Period size: 18  Copynumber: 3.5  Consensus size: 20

        932 TGATGGTCTT

                                
        942 GAAGAAAAAG-AA-AAAAGA
          1 GAAGAAAAAGTAAGAAAAGA

                 *         *    
        960 GAAGACAAAGTAAGAGAAGA
          1 GAAGAAAAAGTAAGAAAAGA

                    *        *   
        980 GAAGGAAACAG-AAGAAGAG-
          1 GAA-GAAAAAGTAAGAAAAGA

                       
        999 GAAGAAAAAGT
          1 GAAGAAAAAGT

       1010 TATTTCGACA


Statistics
Matches: 39,  Mismatches: 7, Indels: 7
        0.74            0.13        0.13

Matches are distributed among these distances:
  18   15  0.38
  19    5  0.13
  20   14  0.36
  21    5  0.13

ACGTcount: A:0.65, C:0.03, G:0.29, T:0.03


Consensus pattern (20 bp):   
GAAGAAAAAGTAAGAAAAGA
Done.