Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003942.1 Kokia drynarioides strain JFW-HI SEQ_117025, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11755
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.29


Found at i:10559 original size:13 final size:13

Alignment explanation


    Indices: 10541--10567  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

      10531 CTACCTTAAC

                         
      10541 TCCTATGTCACCA
          1 TCCTATGTCACCA

                         
      10554 TCCTATGTCACCA
          1 TCCTATGTCACCA

             
      10567 T
          1 T

      10568 ATCACTCAAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.22, C:0.37, G:0.07, T:0.33


Consensus pattern (13 bp):   
TCCTATGTCACCA

Found at i:11727 original size:17 final size:17

Alignment explanation


    Indices: 11702--11748  Score: 58
    Period size: 17  Copynumber: 2.8  Consensus size: 17

      11692 CTGGGCCCAA

                *           *
      11702 TAAACTTAAATTTATTT
          1 TAAAATTAAATTTATTC

                     *       
      11719 TAAAATTAAGTTTATTC
          1 TAAAATTAAATTTATTC

                *        
      11736 TAAATTTAAATTT
          1 TAAAATTAAATTT

      11749 GGTTGAA


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  17   25  1.00

ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51


Consensus pattern (17 bp):   
TAAAATTAAATTTATTC
Done.