Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003949.1 Kokia drynarioides strain JFW-HI SEQ_117034, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 706

Length: 1177
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23


Found at i:693 original size:121 final size:121

Alignment explanation


    Indices: 479--720  Score: 466
    Period size: 121  Copynumber: 2.0  Consensus size: 121

        469 AAAGAGTAGG

                                                         *                   
        479 GACGTGAATTTCCAGGTTGGTGATCTAGTCCTTGCCAAATTGACAGGAATCTTGCGCAATCCAAC
          1 GACGTGAATTTCCAGGTTGGTGATCTAGTCCTTGCCAAATTGACAAGAATCTTGCGCAATCCAAC

                                *                                   
        544 CGTGCACAAAGGGCTTGTGCGAAGATACGAGGGTCCGTTTCGAGTTATGAAGCGGA
         66 CGTGCACAAAGGGCTTGTGCAAAGATACGAGGGTCCGTTTCGAGTTATGAAGCGGA

                                                                             
        600 GACGTGAATTTCCAGGTTGGTGATCTAGTCCTTGCCAAATTGACAAGAATCTTGCGCAATCCAAC
          1 GACGTGAATTTCCAGGTTGGTGATCTAGTCCTTGCCAAATTGACAAGAATCTTGCGCAATCCAAC

                                                                    
        665 CGTGCACAAAGGGCTTGTGCAAAGATACGAGGGTCCGTTTCGAGTTATGAAGCGGA
         66 CGTGCACAAAGGGCTTGTGCAAAGATACGAGGGTCCGTTTCGAGTTATGAAGCGGA

        721 TAAGTACGAT


Statistics
Matches: 119,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 121  119  1.00

ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25


Consensus pattern (121 bp):   
GACGTGAATTTCCAGGTTGGTGATCTAGTCCTTGCCAAATTGACAAGAATCTTGCGCAATCCAAC
CGTGCACAAAGGGCTTGTGCAAAGATACGAGGGTCCGTTTCGAGTTATGAAGCGGA
Done.