Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003950.1 Kokia drynarioides strain JFW-HI SEQ_117036, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5528
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36


Found at i:3410 original size:34 final size:35

Alignment explanation


    Indices: 3342--3414  Score: 103
    Period size: 37  Copynumber: 2.1  Consensus size: 35

       3332 AAATTGTAAT

                        *           *            
       3342 AAAGTTAACATTTTCTCCATAAAATATATCTTGAAAC
          1 AAAGTTAACATTCTCTCCAT--AAGATATCTTGAAAC

                                               
       3379 AAAGTTAACATTCTCTCCAT-AGATATCTTGAAAC
          1 AAAGTTAACATTCTCTCCATAAGATATCTTGAAAC

              
       3413 AA
          1 AA

       3415 TAACAATTCA


Statistics
Matches: 34,  Mismatches: 2, Indels: 3
        0.87            0.05        0.08

Matches are distributed among these distances:
  34   15  0.44
  37   19  0.56

ACGTcount: A:0.42, C:0.18, G:0.07, T:0.33


Consensus pattern (35 bp):   
AAAGTTAACATTCTCTCCATAAGATATCTTGAAAC
Done.