Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01003955.1 Kokia drynarioides strain JFW-HI SEQ_117043, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 116991
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Warning! 36 characters in sequence are not A, C, G, or T
Found at i:1158 original size:30 final size:29
Alignment explanation
Indices: 1122--1678 Score: 451
Period size: 30 Copynumber: 18.9 Consensus size: 29
1112 AAAATTACCA
*
1122 TTTTACCCCCGAACTTCCAAAAATCCCATT
1 TTTTACCCCCAAACTTCCAAAAATCCCA-T
* * *
1152 TTTTACCTCGAACCTTCCAAAAATCACCA-
1 TTTTACCCCCAAACTTCCAAAAATC-CCAT
*
1181 TTTTACCCTCAAACTTCCAAAAATCCCAT
1 TTTTACCCCCAAACTTCCAAAAATCCCAT
* * *
1210 TTTTAACCCCGAAACTTCTCAAAATTACCA-
1 TTTT-ACCCCCAAACTTC-CAAAAATCCCAT
* *
1240 TTTTACCCCCAAACTCCCAAAAATCTCAT
1 TTTTACCCCCAAACTTCCAAAAATCCCAT
*** ** *
1269 TTTTGACCTTAAAACTTCCAAAAATTTCAA
1 TTTT-ACCCCCAAACTTCCAAAAATCCCAT
* *
1299 TTTTACCCCCGAACTTTCAAAAATCCCAT
1 TTTTACCCCCAAACTTCCAAAAATCCCAT
* * *
1328 TTTTGACCCCGAACCTTCCAAAAATTACCA-
1 TTTT-ACCCCCAAACTTCCAAAAA-TCCCAT
* *
1358 TTTTACCCCTAAATTTCCAAAAATCCCAT
1 TTTTACCCCCAAACTTCCAAAAATCCCAT
**
1387 TTTTGA-CCCCAAACCTTCCAAAAATTAC-T
1 TTTT-ACCCCCAAA-CTTCCAAAAATCCCAT
* * *
1416 ATTTACCCCTAAACTTCCAAAAATCTCAT
1 TTTTACCCCCAAACTTCCAAAAATCCCAT
* * *
1445 TTTTGACCCCAAAACTTCTAAAAATTACCA-
1 TTTT-ACCCCCAAACTTCCAAAAA-TCCCAT
*
1475 TTTTACCCCCAAACTCCCAAAAATCCCAT
1 TTTTACCCCCAAACTTCCAAAAATCCCAT
* ** **
1504 TTTAACCCTTAAACTTCCAAAAATTTTCAT
1 TTTTACCCCCAAACTTCCAAAAA-TCCCAT
* * *
1534 TTTTACCCTCGAACTCCCAAAAATCCCAT
1 TTTTACCCCCAAACTTCCAAAAATCCCAT
* **
1563 TTTTGACCCCAAAACTTCCAAAAAATTTTCAT
1 TTTT-ACCCCCAAACTTCC-AAAAA-TCCCAT
**
1595 TTTTACCCCCAAACTTCCAAAAATCTTAT
1 TTTTACCCCCAAACTTCCAAAAATCCCAT
* * **
1624 TTTTGACCTCAAAACTTCCAAAAATCTAAT
1 TTTT-ACCCCCAAACTTCCAAAAATCCCAT
* * * *
1654 TTTTAACCCCGAATTTCCCAAAATC
1 TTTTACCCCCAAACTTCCAAAAATC
1679 ACTATTTTAC
Statistics
Matches: 419, Mismatches: 87, Indels: 43
0.76 0.16 0.08
Matches are distributed among these distances:
28 32 0.08
29 167 0.40
30 175 0.42
31 37 0.09
32 8 0.02
ACGTcount: A:0.35, C:0.31, G:0.02, T:0.31
Consensus pattern (29 bp):
TTTTACCCCCAAACTTCCAAAAATCCCAT
Found at i:1184 original size:59 final size:59
Alignment explanation
Indices: 1111--1648 Score: 659
Period size: 59 Copynumber: 9.1 Consensus size: 59
1101 TAGACTGTCT
* * * * *
1111 AAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTTACCTCGAACCTTCC
1 AAAAATTACCATTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCCCAAAACTTCC
* * * *
1170 AAAAATCACCATTTTACCCTCAAACTTCCAAAAATCCCATTTTTAACCCCGAAACTTCTC
1 AAAAATTACCATTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCCCAAAACTTC-C
* * **
1230 -AAAATTACCATTTTACCCCCAAACTCCCAAAAATCTCATTTTTGACCTTAAAACTTCC
1 AAAAATTACCATTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCCCAAAACTTCC
* * * * * *
1288 AAAAATTTCAATTTTACCCCCGAACTTTCAAAAATCCCATTTTTGACCCCGAACCTTCC
1 AAAAATTACCATTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCCCAAAACTTCC
* * *
1347 AAAAATTACCATTTTACCCCTAAATTTCCAAAAATCCCATTTTTGACCCCAAACCTTCC
1 AAAAATTACCATTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCCCAAAACTTCC
* * * *
1406 AAAAATTACTA-TTTACCCCTAAACTTCCAAAAATCTCATTTTTGACCCCAAAACTTCT
1 AAAAATTACCATTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCCCAAAACTTCC
* * **
1464 AAAAATTACCATTTTACCCCCAAACTCCCAAAAATCCCA-TTTTAACCCTTAAACTTCC
1 AAAAATTACCATTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCCCAAAACTTCC
** * * *
1522 AAAAATTTTCATTTTTACCCTCGAACTCCCAAAAATCCCATTTTTGACCCCAAAACTTCC
1 AAAAATTACCA-TTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCCCAAAACTTCC
** ** *
1582 AAAAAATTTTCATTTTTACCCCCAAACTTCCAAAAATCTTATTTTTGACCTCAAAACTTCC
1 -AAAAATTACCA-TTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCCCAAAACTTCC
1643 AAAAAT
1 AAAAAT
1649 CTAATTTTTA
Statistics
Matches: 416, Mismatches: 57, Indels: 11
0.86 0.12 0.02
Matches are distributed among these distances:
58 78 0.19
59 261 0.63
60 23 0.06
61 54 0.13
ACGTcount: A:0.36, C:0.31, G:0.02, T:0.31
Consensus pattern (59 bp):
AAAAATTACCATTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCCCAAAACTTCC
Found at i:2085 original size:96 final size:96
Alignment explanation
Indices: 1972--2146 Score: 246
Period size: 96 Copynumber: 1.8 Consensus size: 96
1962 GCAATATCCT
** *
1972 TTTATTTCGAGTTCTGAAA-ATTTGTGCCTTAACTTACTAGGTGCAATTTTTCCTCAAATCGAAA
1 TTTATTTCGAGTTCTGAAATA-TTACGCCTTAACTTACTAGGTGCAACTTTTCCTCAAATCGAAA
*
2036 TAATCGAATACCCTTAATCGAGGCAATGTTTC
65 TAATCAAATACCCTTAATCGAGGCAATGTTTC
* * *
2068 TTTATCTTCGA-TTCTGAAATATTACGCCTTAACTTACTAGGTGCAACTTTTCTTTAAATCGAGA
1 TTTAT-TTCGAGTTCTGAAATATTACGCCTTAACTTACTAGGTGCAACTTTTCCTCAAATCGAAA
*
2132 TAATCAAATATCCTT
65 TAATCAAATACCCTT
2147 TTTCCAAAGA
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
96 63 0.91
97 6 0.09
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.39
Consensus pattern (96 bp):
TTTATTTCGAGTTCTGAAATATTACGCCTTAACTTACTAGGTGCAACTTTTCCTCAAATCGAAAT
AATCAAATACCCTTAATCGAGGCAATGTTTC
Found at i:3434 original size:25 final size:25
Alignment explanation
Indices: 3390--3438 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
3380 TTTGAAACTA
*
3390 AAAATATATAAAATTTTAAAAAATT
1 AAAATATATAAAATTATAAAAAATT
3415 AAAATATAT-AAATTAATAAAAAAT
1 AAAATATATAAAATT-ATAAAAAAT
3439 ATTAAACAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (25 bp):
AAAATATATAAAATTATAAAAAATT
Found at i:9080 original size:18 final size:18
Alignment explanation
Indices: 9057--9092 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
9047 TTCAATTAGC
9057 CGATCGATTAACCGAATT
1 CGATCGATTAACCGAATT
* *
9075 CGATCGGTTAACTGAATT
1 CGATCGATTAACCGAATT
9093 AATTCGATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (18 bp):
CGATCGATTAACCGAATT
Found at i:16244 original size:21 final size:21
Alignment explanation
Indices: 16215--16267 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
16205 AATGCAGATA
*
16215 TCTATCGATACAAGTCTTACT
1 TCTACCGATACAAGTCTTACT
16236 TCTACCGATACAAGTCTTACT
1 TCTACCGATACAAGTCTTACT
* *
16257 TTTACAGATAC
1 TCTACCGATAC
16268 TAAAAATTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.36
Consensus pattern (21 bp):
TCTACCGATACAAGTCTTACT
Found at i:18284 original size:18 final size:18
Alignment explanation
Indices: 18269--18303 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
18259 ATAAATAATT
*
18269 GCAAAATAATACATAAAA
1 GCAAAACAATACATAAAA
18287 GCAAAACAATACATAAA
1 GCAAAACAATACATAAA
18304 TGCTCAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.66, C:0.14, G:0.06, T:0.14
Consensus pattern (18 bp):
GCAAAACAATACATAAAA
Found at i:26452 original size:81 final size:81
Alignment explanation
Indices: 26317--26474 Score: 264
Period size: 81 Copynumber: 2.0 Consensus size: 81
26307 ATGAAAATGA
* * *
26317 GCCATTACAGGTATGTTGCAATAGTCATTTCTTTTTCCACATGCAAATAGTGATTCATCATTCAT
1 GCCATTACAGGCATGTTGCAATAGTAATTTCCTTTTCCACATGCAAATAGTGATTCATCATTCAT
26382 ATATTTACTTGTGTAT
66 ATATTTACTTGTGTAT
*
26398 GCCATTACAGGCATGTTGCAATAGTAATTTCCTTTTCCACACT-TAAATAGTGATTCATCATTCA
1 GCCATTACAGGCATGTTGCAATAGTAATTTCCTTTTCCACA-TGCAAATAGTGATTCATCATTCA
26462 TATATTTACTTGT
65 TATATTTACTTGT
26475 ATGTTTTATC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
81 71 0.99
82 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (81 bp):
GCCATTACAGGCATGTTGCAATAGTAATTTCCTTTTCCACATGCAAATAGTGATTCATCATTCAT
ATATTTACTTGTGTAT
Found at i:27767 original size:5 final size:5
Alignment explanation
Indices: 27757--27783 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
27747 CCATATATGA
27757 CTTCT CTTCT CTTCT CTTCT CTTCT CT
1 CTTCT CTTCT CTTCT CTTCT CTTCT CT
27784 GCATTCATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (5 bp):
CTTCT
Found at i:29485 original size:34 final size:33
Alignment explanation
Indices: 29430--29493 Score: 76
Period size: 34 Copynumber: 1.9 Consensus size: 33
29420 ATTTAAGCAT
* *
29430 AAATATCTTTTTAATGCATTTTCAATTTATTAGA
1 AAATATCTTTTTAATGAATTTT-AATATATTAGA
*
29464 AAATATTTATTTTAAT-AATTTTAATATATT
1 AAATATCT-TTTTAATGAATTTTAATATATT
29494 TGATATATTG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
33 7 0.27
34 12 0.46
35 7 0.27
ACGTcount: A:0.39, C:0.05, G:0.03, T:0.53
Consensus pattern (33 bp):
AAATATCTTTTTAATGAATTTTAATATATTAGA
Found at i:29523 original size:14 final size:16
Alignment explanation
Indices: 29500--29531 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
29490 TATTTGATAT
29500 ATTGTATTTTTA-AAA
1 ATTGTATTTTTATAAA
29515 ATTGT-TTTTTATAAA
1 ATTGTATTTTTATAAA
29530 AT
1 AT
29532 AAATTAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
ATTGTATTTTTATAAA
Found at i:32858 original size:11 final size:11
Alignment explanation
Indices: 32839--32871 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
32829 TTAGAATATT
32839 ATTTATATTTA
1 ATTTATATTTA
*
32850 ATTTCTATTTA
1 ATTTATATTTA
32861 ATTTATATTTA
1 ATTTATATTTA
32872 TCTTTTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (11 bp):
ATTTATATTTA
Found at i:37460 original size:16 final size:16
Alignment explanation
Indices: 37439--37472 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
37429 TTTAAAAGTT
*
37439 AAAAAAGAA-AAAGCA
1 AAAAAAAAAGAAAGCA
37454 AAAAAAAAAGAAAGCA
1 AAAAAAAAAGAAAGCA
37470 AAA
1 AAA
37473 CCTTACCTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.82, C:0.06, G:0.12, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAGAAAGCA
Found at i:43573 original size:31 final size:31
Alignment explanation
Indices: 43514--43573 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
43504 GGTGAGGAGA
*
43514 GGCCGACGAGACAAAGATGAGCAGGGGGAAC
1 GGCCGACGAGACAAAGATGAGCACGGGGAAC
* *
43545 GGCCGACG-GACGAAGGTGAAGCACGGGGA
1 GGCCGACGAGACAAAGATG-AGCACGGGGA
43574 TCGAGGACGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 8 0.32
31 17 0.68
ACGTcount: A:0.32, C:0.20, G:0.45, T:0.03
Consensus pattern (31 bp):
GGCCGACGAGACAAAGATGAGCACGGGGAAC
Found at i:44869 original size:25 final size:26
Alignment explanation
Indices: 44827--44877 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
44817 ATTAAATTAT
*
44827 ATTTTTAAAATATGTAATTATCACAA
1 ATTTTTAAAATATATAATTATCACAA
*
44853 ATTTTT-AAATGTATAATTATCACAA
1 ATTTTTAAAATATATAATTATCACAA
44878 CTTCTATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.43
Consensus pattern (26 bp):
ATTTTTAAAATATATAATTATCACAA
Found at i:47986 original size:3 final size:3
Alignment explanation
Indices: 47978--48038 Score: 92
Period size: 3 Copynumber: 21.3 Consensus size: 3
47968 ACAATATCTA
*
47978 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
48025 -AT AAT AAT AA- AAT A
1 AAT AAT AAT AAT AAT A
48039 GTAACAAAAC
Statistics
Matches: 53, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
2 6 0.11
3 47 0.89
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:51954 original size:71 final size:71
Alignment explanation
Indices: 51833--51965 Score: 221
Period size: 71 Copynumber: 1.9 Consensus size: 71
51823 AAGATTTAGG
*
51833 GTTGTTTTGAATGTATGCATTTACTTCTGATAGTGTAAAAATAGCAGTGACAATGAGATTAAATA
1 GTTGTTTTGAATGTATGCATTTACTTCTGATAGTGTAAAAATAACAGTGACAATGAGATTAAATA
51898 CGGTAA
66 CGGTAA
* * * *
51904 GTTGTTTTGAATGTATGCATTTTCTTCTGTTAGTGTAAAAATAACGGTGACGATGAGATTAA
1 GTTGTTTTGAATGTATGCATTTACTTCTGATAGTGTAAAAATAACAGTGACAATGAGATTAA
51966 TTACTGTAGT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (71 bp):
GTTGTTTTGAATGTATGCATTTACTTCTGATAGTGTAAAAATAACAGTGACAATGAGATTAAATA
CGGTAA
Found at i:55867 original size:8 final size:8
Alignment explanation
Indices: 55836--55896 Score: 52
Period size: 8 Copynumber: 7.2 Consensus size: 8
55826 TAGAATTTTT
*
55836 TTTTTAAA
1 TTTTAAAA
55844 TTTTAAAA
1 TTTTAAAA
* *
55852 ATAT-AAA
1 TTTTAAAA
55859 TTTTAAAA
1 TTTTAAAA
55867 TTTTTATAAATA
1 --TTT-TAAA-A
55879 TTTTAAAA
1 TTTTAAAA
55887 TTTTAAAA
1 TTTTAAAA
55895 TT
1 TT
55897 ATTTTTGACT
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
7 5 0.12
8 23 0.53
9 4 0.09
10 6 0.14
11 4 0.09
12 1 0.02
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
TTTTAAAA
Found at i:61906 original size:7 final size:7
Alignment explanation
Indices: 61894--61925 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
61884 TAAAAGAAAG
61894 CCCATTA
1 CCCATTA
61901 CCCATTA
1 CCCATTA
61908 CCCATTA
1 CCCATTA
61915 CCCATTA
1 CCCATTA
61922 CCCA
1 CCCA
61926 ATACATCCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.28, C:0.47, G:0.00, T:0.25
Consensus pattern (7 bp):
CCCATTA
Found at i:65620 original size:6 final size:6
Alignment explanation
Indices: 65601--65633 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
65591 ATGGAGATAC
*
65601 ATAAAA ATATAA ATAAAA ATAAAA ATAAAA ATA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATA
65634 GTTTTTAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (6 bp):
ATAAAA
Found at i:67580 original size:17 final size:16
Alignment explanation
Indices: 67543--67583 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
67533 TAACTCAAAT
*
67543 TTATTTT-ATTTTTAA
1 TTATTTTAATATTTAA
67558 TT-TTTTAATATTTATA
1 TTATTTTAATATTTA-A
67574 TTATTTTAAT
1 TTATTTTAAT
67584 TTAATATTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 4 0.18
15 8 0.36
16 3 0.14
17 7 0.32
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TTATTTTAATATTTAA
Found at i:77645 original size:21 final size:21
Alignment explanation
Indices: 77621--77753 Score: 98
Period size: 21 Copynumber: 6.5 Consensus size: 21
77611 TTTAGAAGAA
* *
77621 TAAACCCTAAATCCTAAACCC
1 TAAACCATAAAGCCTAAACCC
*
77642 TAAATCC-T-AAGGCTAAA-CC
1 TAAA-CCATAAAGCCTAAACCC
*
77661 TAAATCC-T-AAGGCTAAACCC
1 TAAA-CCATAAAGCCTAAACCC
*
77681 TAAACCAT-AGGCCTAAACCC
1 TAAACCATAAAGCCTAAACCC
* * *
77701 TAAAACATAAATCATAAACCC
1 TAAACCATAAAGCCTAAACCC
* * * *
77722 TAAAACATAAATCATAAACCT
1 TAAACCATAAAGCCTAAACCC
77743 TAAACCATAAA
1 TAAACCATAAA
77754 CCATAAATCA
Statistics
Matches: 98, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
19 21 0.21
20 31 0.32
21 44 0.45
22 2 0.02
ACGTcount: A:0.48, C:0.28, G:0.05, T:0.20
Consensus pattern (21 bp):
TAAACCATAAAGCCTAAACCC
Found at i:77664 original size:19 final size:20
Alignment explanation
Indices: 77634--77704 Score: 103
Period size: 19 Copynumber: 3.6 Consensus size: 20
77624 ACCCTAAATC
77634 CTAAACCCTAAATCCTAAGG
1 CTAAACCCTAAATCCTAAGG
77654 CTAAA-CCTAAATCCTAAGG
1 CTAAACCCTAAATCCTAAGG
77673 CTAAACCCTAAA-CC-ATAGG
1 CTAAACCCTAAATCCTA-AGG
77692 CCTAAACCCTAAA
1 -CTAAACCCTAAA
77705 ACATAAATCA
Statistics
Matches: 48, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
18 1 0.02
19 24 0.50
20 23 0.48
ACGTcount: A:0.42, C:0.31, G:0.08, T:0.18
Consensus pattern (20 bp):
CTAAACCCTAAATCCTAAGG
Found at i:77683 original size:7 final size:7
Alignment explanation
Indices: 77621--77760 Score: 63
Period size: 7 Copynumber: 20.6 Consensus size: 7
77611 TTTAGAAGAA
77621 TAAACCC
1 TAAACCC
*
77628 TAAATCC
1 TAAACCC
77635 TAAACCC
1 TAAACCC
*
77642 TAAATCC
1 TAAACCC
**
77649 T-AAGGC
1 TAAACCC
77655 TAAA-CC
1 TAAACCC
*
77661 TAAATCC
1 TAAACCC
**
77668 T-AAGGC
1 TAAACCC
77674 TAAACCC
1 TAAACCC
*
77681 TAAACCA
1 TAAACCC
**
77688 T-AGGCC
1 TAAACCC
77694 TAAACCC
1 TAAACCC
* *
77701 TAAAACA
1 TAAACCC
* *
77708 TAAATCA
1 TAAACCC
77715 TAAACCC
1 TAAACCC
* *
77722 TAAAACA
1 TAAACCC
* *
77729 TAAATCA
1 TAAACCC
*
77736 TAAACCT
1 TAAACCC
*
77743 TAAACCA
1 TAAACCC
*
77750 TAAACCA
1 TAAACCC
77757 TAAA
1 TAAA
77761 TCATAAGATT
Statistics
Matches: 102, Mismatches: 27, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
6 16 0.16
7 86 0.84
ACGTcount: A:0.49, C:0.28, G:0.04, T:0.19
Consensus pattern (7 bp):
TAAACCC
Found at i:77709 original size:20 final size:21
Alignment explanation
Indices: 77633--77731 Score: 98
Period size: 20 Copynumber: 4.9 Consensus size: 21
77623 AACCCTAAAT
* *
77633 CCTAAACCCTAAATCCTAAGG
1 CCTAAACCCTAAAACATAAGG
* *
77654 -CTAAA-CCTAAATCCTAAGG
1 CCTAAACCCTAAAACATAAGG
*
77673 -CTAAACCCTAAACCAT-AGG
1 CCTAAACCCTAAAACATAAGG
**
77692 CCTAAACCCTAAAACATAAAT
1 CCTAAACCCTAAAACATAAGG
*
77713 CATAAACCCTAAAACATAA
1 CCTAAACCCTAAAACATAA
77732 ATCATAAACC
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
19 22 0.32
20 28 0.41
21 19 0.28
ACGTcount: A:0.46, C:0.29, G:0.06, T:0.18
Consensus pattern (21 bp):
CCTAAACCCTAAAACATAAGG
Found at i:77758 original size:21 final size:21
Alignment explanation
Indices: 77674--77787 Score: 106
Period size: 21 Copynumber: 5.5 Consensus size: 21
77664 ATCCTAAGGC
* **
77674 TAAACCCTAAACCATAGGCC-
1 TAAACCCTAAAACATAAACCA
*
77694 TAAACCCTAAAACATAAATCA
1 TAAACCCTAAAACATAAACCA
*
77715 TAAACCCTAAAACATAAATCA
1 TAAACCCTAAAACATAAACCA
* *
77736 TAAACCTTAAACCATAAACCA
1 TAAACCCTAAAACATAAACCA
* * * * *
77757 TAAATCATAAGA-TTAAACCT
1 TAAACCCTAAAACATAAACCA
77777 TAAACCCTAAA
1 TAAACCCTAAA
77788 TCTTAAAGTT
Statistics
Matches: 77, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
20 30 0.39
21 47 0.61
ACGTcount: A:0.52, C:0.25, G:0.03, T:0.20
Consensus pattern (21 bp):
TAAACCCTAAAACATAAACCA
Found at i:77765 original size:7 final size:7
Alignment explanation
Indices: 77674--77766 Score: 80
Period size: 7 Copynumber: 13.4 Consensus size: 7
77664 ATCCTAAGGC
*
77674 TAAACCC
1 TAAACCA
77681 TAAACCA
1 TAAACCA
**
77688 TAGGCC-
1 TAAACCA
*
77694 TAAACCC
1 TAAACCA
*
77701 TAAAACA
1 TAAACCA
*
77708 TAAATCA
1 TAAACCA
*
77715 TAAACCC
1 TAAACCA
*
77722 TAAAACA
1 TAAACCA
*
77729 TAAATCA
1 TAAACCA
*
77736 TAAACCT
1 TAAACCA
77743 TAAACCA
1 TAAACCA
77750 TAAACCA
1 TAAACCA
*
77757 TAAATCA
1 TAAACCA
77764 TAA
1 TAA
77767 GATTAAACCT
Statistics
Matches: 68, Mismatches: 17, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
6 4 0.06
7 64 0.94
ACGTcount: A:0.53, C:0.26, G:0.02, T:0.19
Consensus pattern (7 bp):
TAAACCA
Found at i:77772 original size:27 final size:27
Alignment explanation
Indices: 77692--77835 Score: 123
Period size: 27 Copynumber: 5.3 Consensus size: 27
77682 AAACCATAGG
* * *
77692 CCTAAACCCTAAAACATAAATCATAAAC
1 CCTAAACCATAAATCATAAA-CTTAAAC
*
77720 CCTAAAACATAAATCATAAACCTTAAAC
1 CCTAAACCATAAATCATAAA-CTTAAAC
*
77748 CATAAACCATAAATCATAAGA-TTAAAC
1 CCTAAACCATAAATCATAA-ACTTAAAC
* * * *
77775 CTTAAACCCTAAATCTTAAAGTTAAAC
1 CCTAAACCATAAATCATAAACTTAAAC
**
77802 CCTAAA-CATTAAA-CATTAAGGTTAAAC
1 CCTAAACCA-TAAATCA-TAAACTTAAAC
77829 CCTAAAC
1 CCTAAAC
77836 ATTAAGGTTA
Statistics
Matches: 97, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
26 3 0.03
27 53 0.55
28 40 0.41
29 1 0.01
ACGTcount: A:0.51, C:0.24, G:0.03, T:0.23
Consensus pattern (27 bp):
CCTAAACCATAAATCATAAACTTAAAC
Found at i:77779 original size:7 final size:7
Alignment explanation
Indices: 77736--78014 Score: 75
Period size: 7 Copynumber: 41.4 Consensus size: 7
77726 ACATAAATCA
77736 TAAACCT
1 TAAACCT
*
77743 TAAACCA
1 TAAACCT
*
77750 TAAACCA
1 TAAACCT
* *
77757 TAAATCA
1 TAAACCT
77764 TAAGA--T
1 TAA-ACCT
77770 TAAACCT
1 TAAACCT
*
77777 TAAACCC
1 TAAACCT
*
77784 TAAATCT
1 TAAACCT
*
77791 TAAA-GT
1 TAAACCT
*
77797 TAAACCC
1 TAAACCT
*
77804 TAAACAT
1 TAAACCT
*
77811 TAAACAT
1 TAAACCT
**
77818 T-AAGGT
1 TAAACCT
*
77824 TAAACCC
1 TAAACCT
*
77831 TAAACAT
1 TAAACCT
**
77838 T-AAGGT
1 TAAACCT
*
77844 TAAACCA
1 TAAACCT
77851 TAAACCT
1 TAAACCT
**
77858 TAAAATT
1 TAAACCT
*
77865 TAAATCT
1 TAAACCT
***
77872 T-AGGGT
1 TAAACCT
77878 TAAATCC-
1 TAAA-CCT
77885 TAAATCC-
1 TAAA-CCT
*
77892 TAAACCC
1 TAAACCT
*
77899 TAAACAT
1 TAAACCT
77906 T-AA--T
1 TAAACCT
*
77910 GTAAACCC
1 -TAAACCT
77918 TAAACC-
1 TAAACCT
*
77924 TAAACCC
1 TAAACCT
***
77931 T-AGGGT
1 TAAACCT
*
77937 TAAACCA
1 TAAACCT
77944 TAAACCT
1 TAAACCT
77951 TAAACCT
1 TAAACCT
**
77958 T-AATGT
1 TAAACCT
77964 TAAACCT
1 TAAACCT
*
77971 TAAACCC
1 TAAACCT
77978 TAAACCT
1 TAAACCT
*
77985 TAAATCT
1 TAAACCT
**
77992 T-AAGGT
1 TAAACCT
*
77998 TAAACCC
1 TAAACCT
78005 TAAACCT
1 TAAACCT
78012 TAA
1 TAA
78015 GATTAAACAC
Statistics
Matches: 196, Mismatches: 59, Indels: 34
0.68 0.20 0.12
Matches are distributed among these distances:
4 1 0.01
5 2 0.01
6 41 0.21
7 151 0.77
8 1 0.01
ACGTcount: A:0.45, C:0.22, G:0.06, T:0.27
Consensus pattern (7 bp):
TAAACCT
Found at i:77813 original size:20 final size:20
Alignment explanation
Indices: 77811--77860 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
77801 CCCTAAACAT
*
77811 TAAACATTAAGGTTAAACCC
1 TAAACATTAAGGTTAAACCA
77831 TAAACATTAAGGTTAAACCA
1 TAAACATTAAGGTTAAACCA
*
77851 TAAACCTTAA
1 TAAACATTAA
77861 AATTTAAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.48, C:0.18, G:0.08, T:0.26
Consensus pattern (20 bp):
TAAACATTAAGGTTAAACCA
Found at i:77965 original size:27 final size:27
Alignment explanation
Indices: 77892--78035 Score: 127
Period size: 27 Copynumber: 5.4 Consensus size: 27
77882 TCCTAAATCC
* *
77892 TAAACCCTAAACATTAATG-TAAACCC
1 TAAACCCTAAACCTTAATGTTAAACCA
* **
77918 TAAA-CCTAAACCCTAGGGTTAAACCA
1 TAAACCCTAAACCTTAATGTTAAACCA
* *
77944 TAAACCTTAAACCTTAATGTTAAACCT
1 TAAACCCTAAACCTTAATGTTAAACCA
* ***
77971 TAAACCCTAAACCTTAAATCTT-AAGGT
1 TAAACCCTAAACCTT-AATGTTAAACCA
77998 TAAACCCTAAACCTTAA-GATTAAA-CA
1 TAAACCCTAAACCTTAATG-TTAAACCA
78024 CTAAACCCTAAA
1 -TAAACCCTAAA
78036 TATTAAATTT
Statistics
Matches: 95, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
25 10 0.11
26 18 0.19
27 62 0.65
28 5 0.05
ACGTcount: A:0.44, C:0.25, G:0.06, T:0.25
Consensus pattern (27 bp):
TAAACCCTAAACCTTAATGTTAAACCA
Found at i:77982 original size:34 final size:34
Alignment explanation
Indices: 77936--78010 Score: 114
Period size: 34 Copynumber: 2.2 Consensus size: 34
77926 AACCCTAGGG
*
77936 TTAAACCATAAACCTTAAACCTTAATGTTAAACC
1 TTAAACCATAAACCTTAAACCTTAAGGTTAAACC
* *
77970 TTAAACCCTAAACCTTAAATCTTAAGGTTAAACC
1 TTAAACCATAAACCTTAAACCTTAAGGTTAAACC
*
78004 CTAAACC
1 TTAAACC
78011 TTAAGATTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.43, C:0.25, G:0.04, T:0.28
Consensus pattern (34 bp):
TTAAACCATAAACCTTAAACCTTAAGGTTAAACC
Found at i:78003 original size:20 final size:20
Alignment explanation
Indices: 77978--78030 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
77968 CCTTAAACCC
* * *
77978 TAAACCTTAAATCTTAAGGT
1 TAAACCCTAAACCTTAAGAT
77998 TAAACCCTAAACCTTAAGAT
1 TAAACCCTAAACCTTAAGAT
*
78018 TAAACACTAAACC
1 TAAACCCTAAACC
78031 CTAAATATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.45, C:0.23, G:0.06, T:0.26
Consensus pattern (20 bp):
TAAACCCTAAACCTTAAGAT
Found at i:78041 original size:27 final size:27
Alignment explanation
Indices: 77998--78094 Score: 88
Period size: 27 Copynumber: 3.6 Consensus size: 27
77988 ATCTTAAGGT
*
77998 TAAACCCTAAACCTTAAGATTAAACAC
1 TAAACCCTAAATCTTAAGATTAAACAC
* ** ***
78025 TAAACCCTAAATATTAA-ATTTTAGTG
1 TAAACCCTAAATCTTAAGATTAAACAC
* * *
78051 TAAACCCTAAATTTTAAGATTAGACCC
1 TAAACCCTAAATCTTAAGATTAAACAC
*
78078 TAAACCTTAAATCTTAA
1 TAAACCCTAAATCTTAA
78095 ATCTTAAACT
Statistics
Matches: 54, Mismatches: 15, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
26 20 0.37
27 34 0.63
ACGTcount: A:0.44, C:0.20, G:0.05, T:0.31
Consensus pattern (27 bp):
TAAACCCTAAATCTTAAGATTAAACAC
Found at i:78141 original size:20 final size:20
Alignment explanation
Indices: 78098--78143 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
78088 ATCTTAAATC
* * *
78098 TTAAACTCTAAAGCCTATGA
1 TTAAACTCCAAACCCTAGGA
*
78118 TTAAACTCCAAACCCTAGGG
1 TTAAACTCCAAACCCTAGGA
78138 TTAAAC
1 TTAAAC
78144 CTTAAACTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.26
Consensus pattern (20 bp):
TTAAACTCCAAACCCTAGGA
Found at i:78346 original size:20 final size:19
Alignment explanation
Indices: 78321--78382 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 19
78311 CACTAAGAAC
78321 TAAACCCTAAACTCTAAACA
1 TAAACCCTAAAC-CTAAACA
* *
78341 TAAACCCTAAACCTTAATA
1 TAAACCCTAAACCTAAACA
78360 TTAAAACCCTAAACCCTAAACA
1 -T-AAACCCTAAA-CCTAAACA
78382 T
1 T
78383 TAAATCATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
19 5 0.14
20 13 0.37
21 11 0.31
22 6 0.17
ACGTcount: A:0.48, C:0.29, G:0.00, T:0.23
Consensus pattern (19 bp):
TAAACCCTAAACCTAAACA
Found at i:78419 original size:20 final size:20
Alignment explanation
Indices: 78396--78446 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
78386 ATCATAATGA
*
78396 TAAACCTTAAATATTAAGG-T
1 TAAACCATAAATATT-AGGAT
*
78416 TAAACCCTAAATATTAGGAT
1 TAAACCATAAATATTAGGAT
78436 TAAACCATAAA
1 TAAACCATAAA
78447 CCCTAAACAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 3 0.11
20 25 0.89
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.29
Consensus pattern (20 bp):
TAAACCATAAATATTAGGAT
Found at i:78426 original size:27 final size:26
Alignment explanation
Indices: 78396--78481 Score: 75
Period size: 27 Copynumber: 3.2 Consensus size: 26
78386 ATCATAATGA
* *
78396 TAAACCTTAAATATTAAGGTTAAACCC
1 TAAACATTAAAT-TTAAGATTAAACCC
* * * *
78423 TAAATATTAGGATTAAACCA-TAAACCC
1 TAAACATTA-AATTTAA-GATTAAACCC
78450 TAAACATTAAATCTTAAGATTAAACCC
1 TAAACATTAAAT-TTAAGATTAAACCC
78477 TAAAC
1 TAAAC
78482 CCTATGATTA
Statistics
Matches: 45, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
26 3 0.07
27 40 0.89
28 2 0.04
ACGTcount: A:0.48, C:0.19, G:0.06, T:0.28
Consensus pattern (26 bp):
TAAACATTAAATTTAAGATTAAACCC
Found at i:78454 original size:34 final size:34
Alignment explanation
Indices: 78416--78485 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 34
78406 ATATTAAGGT
* *
78416 TAAACCCTAAATATTAGGATTAAACCATAAACCC
1 TAAACACTAAATATTAAGATTAAACCATAAACCC
* * *
78450 TAAACATTAAATCTTAAGATTAAACCCTAAACCC
1 TAAACACTAAATATTAAGATTAAACCATAAACCC
78484 TA
1 TA
78486 TGATTAAACT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.47, C:0.23, G:0.04, T:0.26
Consensus pattern (34 bp):
TAAACACTAAATATTAAGATTAAACCATAAACCC
Found at i:78480 original size:20 final size:20
Alignment explanation
Indices: 78464--78521 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
78454 CATTAAATCT
78464 TAAGATTAAACCCTAAACCC
1 TAAGATTAAACCCTAAACCC
* * *
78484 TATGATTAAACTCTAGACCC
1 TAAGATTAAACCCTAAACCC
*
78504 TAAGGTTAAACCCTAAAC
1 TAAGATTAAACCCTAAAC
78522 TAATGAGCAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.41, C:0.26, G:0.09, T:0.24
Consensus pattern (20 bp):
TAAGATTAAACCCTAAACCC
Found at i:82322 original size:40 final size:40
Alignment explanation
Indices: 82269--82351 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
82259 TATATGTTTA
82269 AAACAAGCAAAGTAGGAATTGTGGATTCAATTATTTCATT
1 AAACAAGCAAAGTAGGAATTGTGGATTCAATTATTTCATT
82309 AAACAAGCAAAGTAGGAATTGTGGATTCAATTATTTCATT
1 AAACAAGCAAAGTAGGAATTGTGGATTCAATTATTTCATT
82349 AAA
1 AAA
82352 ATAATGTAAC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.31
Consensus pattern (40 bp):
AAACAAGCAAAGTAGGAATTGTGGATTCAATTATTTCATT
Found at i:87233 original size:50 final size:48
Alignment explanation
Indices: 87158--87255 Score: 178
Period size: 50 Copynumber: 2.0 Consensus size: 48
87148 TATTAGAAAT
87158 CTATTCTTATAAACCAATAATGCCCCCAAAACAAAATCTTAACCAATTTA
1 CTATTCTTATAAACCAATAATGCCCCC--AACAAAATCTTAACCAATTTA
87208 CTATTCTTATAAACCAATAATGCCCCCAACAAAATCTTAACCAATTTA
1 CTATTCTTATAAACCAATAATGCCCCCAACAAAATCTTAACCAATTTA
87256 TTGCTCAGAT
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
48 21 0.44
50 27 0.56
ACGTcount: A:0.43, C:0.27, G:0.02, T:0.29
Consensus pattern (48 bp):
CTATTCTTATAAACCAATAATGCCCCCAACAAAATCTTAACCAATTTA
Found at i:91125 original size:29 final size:27
Alignment explanation
Indices: 91093--91171 Score: 68
Period size: 29 Copynumber: 2.7 Consensus size: 27
91083 TTGAGGATTA
91093 AAATTGAATTTTGGAAAGTTCGAGGGTC
1 AAATT-AATTTTGGAAAGTTCGAGGGTC
* * * *
91121 GAAATCAAATTTTGGAGAGTTTGGGGGTC
1 -AAAT-TAATTTTGGAAAGTTCGAGGGTC
91150 AAATCCTAATTTTTGGAAAGTT
1 AAAT--TAA-TTTTGGAAAGTT
91172 TAGGCTTTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
28 4 0.10
29 26 0.63
30 11 0.27
ACGTcount: A:0.32, C:0.08, G:0.27, T:0.34
Consensus pattern (27 bp):
AAATTAATTTTGGAAAGTTCGAGGGTC
Found at i:91301 original size:31 final size:32
Alignment explanation
Indices: 91248--91356 Score: 104
Period size: 31 Copynumber: 3.6 Consensus size: 32
91238 CAAATTTGAA
* *
91248 TTTTGGAAAGTTTAGGGGTCAAAATGTGATTT
1 TTTTGGAAAGTTTAGGGGTCAAAATATCATTT
*
91280 TTTTGGAAATTTTA-GGGTCAAAATATCA--T
1 TTTTGGAAAGTTTAGGGGTCAAAATATCATTT
* * **
91309 TTTT-AAAAGTTT-GGGGATCAAAATCT-AAAT
1 TTTTGGAAAGTTTAGGGG-TCAAAATATCATTT
91339 TTTTGGAAAGTTTAGGGG
1 TTTTGGAAAGTTTAGGGG
91357 CCTCTAGGTA
Statistics
Matches: 64, Mismatches: 7, Indels: 12
0.77 0.08 0.14
Matches are distributed among these distances:
28 10 0.16
29 13 0.20
30 5 0.08
31 19 0.30
32 17 0.27
ACGTcount: A:0.32, C:0.05, G:0.24, T:0.39
Consensus pattern (32 bp):
TTTTGGAAAGTTTAGGGGTCAAAATATCATTT
Found at i:96780 original size:18 final size:17
Alignment explanation
Indices: 96738--96780 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
96728 TTTGTAAGTT
*
96738 TATAATATTTTATATTA
1 TATAATTTTTTATATTA
* *
96755 TGTTATTTTTATATATTA
1 TATAATTTTT-TATATTA
96773 TATAATTT
1 TATAATTT
96781 AGAATATATT
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (17 bp):
TATAATTTTTTATATTA
Found at i:96904 original size:22 final size:22
Alignment explanation
Indices: 96876--96919 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
96866 AATTATACAT
96876 TAAATA-TTAAAATAAAATAAAA
1 TAAATATTTAAAA-AAAATAAAA
*
96898 TAAATATTTATAAAAAATAAAA
1 TAAATATTTAAAAAAAATAAAA
96920 AATAATATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (22 bp):
TAAATATTTAAAAAAAATAAAA
Found at i:103194 original size:62 final size:62
Alignment explanation
Indices: 103113--103240 Score: 150
Period size: 62 Copynumber: 2.1 Consensus size: 62
103103 TATTTTAAAA
* ** * * *
103113 TTTTTAGAGTTAGGACTAAATTGACATATTTCATAAATGTTGAGGGCCAAATTTATTGAGTT
1 TTTTTAGAATTAGGACTAAAAAGACAAATTTCATAAATATTGAGGGCCAAATTTATTGAATT
** * *
103175 TTTTTAGAATTA-GATCTAAAAAGACAAATTTTGTAAATATTGATGGCTAAATTTATTGAATT
1 TTTTTAGAATTAGGA-CTAAAAAGACAAATTTCATAAATATTGAGGGCCAAATTTATTGAATT
103237 TTTT
1 TTTT
103241 ATATATAGGA
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
61 2 0.04
62 53 0.96
ACGTcount: A:0.35, C:0.06, G:0.16, T:0.43
Consensus pattern (62 bp):
TTTTTAGAATTAGGACTAAAAAGACAAATTTCATAAATATTGAGGGCCAAATTTATTGAATT
Found at i:103889 original size:28 final size:29
Alignment explanation
Indices: 103848--103903 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
103838 AGACTCTTTT
* *
103848 AAAATATTAAAATTTTA-ATTTAATTTAAA
1 AAAAAATTAAAA-TTTACATTAAATTTAAA
103877 AAAAAATT-AAATTTACATTAAATTTAA
1 AAAAAATTAAAATTTACATTAAATTTAA
103904 CATTATACCT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 4 0.17
28 13 0.54
29 7 0.29
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (29 bp):
AAAAAATTAAAATTTACATTAAATTTAAA
Found at i:105476 original size:28 final size:28
Alignment explanation
Indices: 105436--105507 Score: 76
Period size: 27 Copynumber: 2.6 Consensus size: 28
105426 ATCGGAGTTG
*
105436 AAAATGAG-AATTTTGGATACCCGAGGGC
1 AAAATG-GTAATTTTGGACACCCGAGGGC
* * *
105464 AAAATGGTAA-TTTAGACACTCGAGGGT
1 AAAATGGTAATTTTGGACACCCGAGGGC
*
105491 AAATTGGTAATTTTGGA
1 AAAATGGTAATTTTGGA
105508 AAAAAATGGG
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
27 23 0.64
28 13 0.36
ACGTcount: A:0.36, C:0.10, G:0.26, T:0.28
Consensus pattern (28 bp):
AAAATGGTAATTTTGGACACCCGAGGGC
Found at i:105562 original size:28 final size:28
Alignment explanation
Indices: 105530--105890 Score: 197
Period size: 29 Copynumber: 12.5 Consensus size: 28
105520 CAAAAATAGG
105530 ATTTTGGAAAGTTT-GGGGTAAAATGATA
1 ATTTTGGAAAGTTTAGGGGTAAAATG-TA
105558 ATTTTTGGTGAAA---TAGGGGTCAAAAAT-TGA
1 A-TTTT-G-GAAAGTTTAGGGGT--AAAATGT-A
105588 ATTTTGGAAAGTTTAGGGGTAAAATTGTA
1 ATTTTGGAAAGTTTAGGGGTAAAA-TGTA
* * *
105617 ATTTTTGAAAATTTAGGAGTAAAATGGTA
1 ATTTTGGAAAGTTTAGGGGTAAAAT-GTA
*
105646 ATTTTGGAAAGTTTAAGGGTAAAATTGT-
1 ATTTTGGAAAGTTTAGGGGTAAAA-TGTA
* *
105674 ATTTTTGAAAGTTTAGGGGTAAACTGGTA
1 ATTTTGGAAAGTTTAGGGGTAAAAT-GTA
* *
105703 ATTTTGGTGAAA--TCA-GGGTCAAAATGGA
1 ATTTT-G-GAAAGTTTAGGGGT-AAAATGTA
* * *
105731 ATTTTGGTAAG-TTCGAGAGTAAAAGTGTA
1 ATTTTGGAAAGTTTAG-GGGTAAAA-TGTA
* * *
105760 ATTTTTGAAAGTTCATGGGTAAAAATGTA
1 ATTTTGGAAAGTTTAGGGGT-AAAATGTA
** *
105789 A-TTTCAAGAAG-TTCGAGGGTAAAAATGTA
1 ATTTTGGA-AAGTTTAG-GGGT-AAAATGTA
* * * *
105818 ATTTTTGCAAGTTCAAGGGTAAAAATGTA
1 ATTTTGGAAAGTTTAGGGGT-AAAATGTA
* * *
105847 ATTTTTAGTAAGTTTAGGGGTTAAAATATA
1 A-TTTTGGAAAGTTTAGGGG-TAAAATGTA
*
105877 ATTTTTGGATAGTT
1 A-TTTTGGAAAGTT
105891 CAAGGACTTT
Statistics
Matches: 258, Mismatches: 44, Indels: 60
0.71 0.12 0.17
Matches are distributed among these distances:
26 3 0.01
27 7 0.03
28 51 0.20
29 130 0.50
30 53 0.21
31 14 0.05
ACGTcount: A:0.36, C:0.03, G:0.25, T:0.37
Consensus pattern (28 bp):
ATTTTGGAAAGTTTAGGGGTAAAATGTA
Found at i:105619 original size:59 final size:58
Alignment explanation
Indices: 105487--105680 Score: 197
Period size: 58 Copynumber: 3.3 Consensus size: 58
105477 AGACACTCGA
* *
105487 GGGT-AAATTGGTAA-TTTTGGAAAAAAATGGGGTCAAAAATAGGATTTTGGAAAGTTT-G
1 GGGTAAAATT-GTAATTTTTGG-AAAATA-GGGGTCAAAAATAGAATTTTGGAAAGTTTAG
* *
105545 GGGTAAAA-TGATAATTTTTGGTGAAATAGGGGTCAAAAATTGAATTTTGGAAAGTTTAG
1 GGGTAAAATTG-TAATTTTTGG-AAAATAGGGGTCAAAAATAGAATTTTGGAAAGTTTAG
* * *
105604 GGGTAAAATTGTAATTTTT-GAAAATTTAGGAGT--AAAATGGTAATTTTGGAAAGTTTAA
1 GGGTAAAATTGTAATTTTTGGAAAA--TAGGGGTCAAAAATAG-AATTTTGGAAAGTTTAG
105662 GGGTAAAATTGT-ATTTTTG
1 GGGTAAAATTGTAATTTTTG
105681 AAAGTTTAGG
Statistics
Matches: 118, Mismatches: 9, Indels: 18
0.81 0.06 0.12
Matches are distributed among these distances:
57 16 0.14
58 64 0.54
59 36 0.31
60 2 0.02
ACGTcount: A:0.37, C:0.01, G:0.26, T:0.36
Consensus pattern (58 bp):
GGGTAAAATTGTAATTTTTGGAAAATAGGGGTCAAAAATAGAATTTTGGAAAGTTTAG
Found at i:105669 original size:58 final size:57
Alignment explanation
Indices: 105587--105709 Score: 201
Period size: 57 Copynumber: 2.1 Consensus size: 57
105577 TCAAAAATTG
*
105587 AATTTTGGAAAGTTTAGGGGTAAAATTGTAATTTTTGAAAATTTAGGAGTAAAATGGT
1 AATTTTGGAAAGTTTAAGGGTAAAATTGT-ATTTTTGAAAATTTAGGAGTAAAATGGT
* * *
105645 AATTTTGGAAAGTTTAAGGGTAAAATTGTATTTTTGAAAGTTTAGGGGTAAACTGGT
1 AATTTTGGAAAGTTTAAGGGTAAAATTGTATTTTTGAAAATTTAGGAGTAAAATGGT
105702 AATTTTGG
1 AATTTTGG
105710 TGAAATCAGG
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
57 33 0.54
58 28 0.46
ACGTcount: A:0.35, C:0.01, G:0.25, T:0.39
Consensus pattern (57 bp):
AATTTTGGAAAGTTTAAGGGTAAAATTGTATTTTTGAAAATTTAGGAGTAAAATGGT
Found at i:105687 original size:86 final size:87
Alignment explanation
Indices: 105580--105883 Score: 295
Period size: 86 Copynumber: 3.5 Consensus size: 87
105570 ATAGGGGTCA
* *
105580 AAAATTG-AATTTTGGAAAGTTTAGGGGTAAAATTGTAATTTTTGAAAATTTAGGAGT-AAAATG
1 AAAATTGTAATTTTTGAAAGTTTAGGGGTAAAATTGTAATTTTTGAAAATTCAGG-GTAAAAATG
*
105643 GTAATTTTGGAAAGTTTAAGGGT
65 GTAATTTTGGAAAGTTCAAGGGT
* * *
105666 AAAATTGT-ATTTTTGAAAGTTTAGGGGTAAACTGGTAATTTTGGTG-AAA-TCAGGGTCAAAAT
1 AAAATTGTAATTTTTGAAAGTTTAGGGGTAAAATTGTAATTTT--TGAAAATTCAGGGTAAAAAT
* * *
105728 GG-AATTTTGGTAAGTTCGAGAGT
64 GGTAATTTTGGAAAGTTCAAGGGT
* * * * *
105751 AAAAGTGTAATTTTTGAAAGTTCATGGGTAAAAATGTAA--TTTCAAGAAGTTCGAGGGTAAAAA
1 AAAATTGTAATTTTTGAAAGTTTAGGGGTAAAATTGTAATTTTTGAA-AA-TTC-AGGGTAAAAA
* *
105814 T-GTAATTTTTGCAAGTTCAAGGGT
63 TGGTAATTTTGGAAAGTTCAAGGGT
* * *
105838 AAAAATGTAATTTTTAGTAAGTTTAGGGGTTAAAA-TATAATTTTTG
1 AAAATTGTAATTTTT-GAAAGTTTAGGGG-TAAAATTGTAATTTTTG
105884 GATAGTTCAA
Statistics
Matches: 177, Mismatches: 26, Indels: 26
0.77 0.11 0.11
Matches are distributed among these distances:
82 1 0.01
83 1 0.01
84 4 0.02
85 26 0.15
86 77 0.44
87 44 0.25
88 16 0.09
89 5 0.03
90 3 0.02
ACGTcount: A:0.37, C:0.03, G:0.24, T:0.37
Consensus pattern (87 bp):
AAAATTGTAATTTTTGAAAGTTTAGGGGTAAAATTGTAATTTTTGAAAATTCAGGGTAAAAATGG
TAATTTTGGAAAGTTCAAGGGT
Found at i:105851 original size:29 final size:29
Alignment explanation
Indices: 105574--105895 Score: 221
Period size: 29 Copynumber: 11.1 Consensus size: 29
105564 GGTGAAATAG
* * *
105574 GGGTCAAAAAT-TGAATTTTGGAAAGTTTAG
1 GGGT-AAAAATGT-AATTTTTGAAAGTTCAA
* * *
105604 GGGTAAAATTGTAATTTTTGAAAATT-TA
1 GGGTAAAAATGTAATTTTTGAAAGTTCAA
* *
105632 GGAGT-AAAATGGTAATTTTGGAAAGTTTAA
1 GG-GTAAAAAT-GTAATTTTTGAAAGTTCAA
* * *
105662 GGGTAAAATTGT-ATTTTTGAAAGTTTAG
1 GGGTAAAAATGTAATTTTTGAAAGTTCAA
*
105690 GGGT-AAACTGGTAATTTTGGTGAAA--TC-A
1 GGGTAAAAAT-GTAATTTT--TGAAAGTTCAA
* * * * *
105718 GGGTCAAAATGGAATTTTGGTAAGTTCGA
1 GGGTAAAAATGTAATTTTTGAAAGTTCAA
* * *
105747 GAGTAAAAGTGTAATTTTTGAAAGTTCAT
1 GGGTAAAAATGTAATTTTTGAAAGTTCAA
** *
105776 GGGTAAAAATGTAA-TTTCAAGAAGTTCGA
1 GGGTAAAAATGTAATTTTTGA-AAGTTCAA
*
105805 GGGTAAAAATGTAATTTTTGCAAGTTCAA
1 GGGTAAAAATGTAATTTTTGAAAGTTCAA
* * *
105834 GGGTAAAAATGTAATTTTTAGTAAGTTTAG
1 GGGTAAAAATGTAATTTTT-GAAAGTTCAA
* * *
105864 GGGTTAAAATATAATTTTTGGATAGTTCAA
1 GGGTAAAAATGTAATTTTT-GAAAGTTCAA
105894 GG
1 GG
105896 ACTTTTAAGG
Statistics
Matches: 229, Mismatches: 47, Indels: 32
0.74 0.15 0.10
Matches are distributed among these distances:
26 3 0.01
27 4 0.02
28 43 0.19
29 127 0.55
30 47 0.21
31 5 0.02
ACGTcount: A:0.36, C:0.03, G:0.25, T:0.36
Consensus pattern (29 bp):
GGGTAAAAATGTAATTTTTGAAAGTTCAA
Found at i:106746 original size:3 final size:3
Alignment explanation
Indices: 106738--106789 Score: 52
Period size: 3 Copynumber: 16.3 Consensus size: 3
106728 CGTTATTTAT
*
106738 TTA TTA TTA TTA TTA TTAA TTA TTA TTA TT- TATG TTA TTTA TTA TTAA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA T-TA TTA -TTA TTA TT-A
106786 TTA T
1 TTA T
106790 AAATTTAATG
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
2 1 0.02
3 32 0.74
4 10 0.23
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:106762 original size:19 final size:20
Alignment explanation
Indices: 106738--106813 Score: 66
Period size: 19 Copynumber: 3.6 Consensus size: 20
106728 CGTTATTTAT
106738 TTATTATTATTAT-TATTAA
1 TTATTATTATTATATATTAA
* *
106757 TTATTATTATT-TATGTTAT
1 TTATTATTATTATATATTAA
*
106776 TTATTATTAATTATAAATTTAA
1 TTATTATT-ATTATATA-TTAA
106798 TGTACTTATTTATTAT
1 T-TA-TTA-TTATTAT
106814 CCTAAAATGA
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
18 1 0.02
19 23 0.51
20 3 0.07
21 2 0.04
22 4 0.09
23 2 0.04
24 8 0.18
25 2 0.04
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (20 bp):
TTATTATTATTATATATTAA
Found at i:106766 original size:29 final size:29
Alignment explanation
Indices: 106735--106790 Score: 53
Period size: 29 Copynumber: 2.0 Consensus size: 29
106725 AAACGTTATT
*
106735 TATTTATTATTA-TTATTATTAATTATTAT
1 TATTTATTATTAATTATTATTATTTA-TAT
* * *
106764 TATTTA-TGTTATTTATTATTAATTATA
1 TATTTATTATTAATTATTATTATTTATA
106791 AATTTAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 6 0.24
29 19 0.76
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (29 bp):
TATTTATTATTAATTATTATTATTTATAT
Found at i:107557 original size:16 final size:16
Alignment explanation
Indices: 107515--107572 Score: 62
Period size: 18 Copynumber: 3.4 Consensus size: 16
107505 ATATTAAGTT
*
107515 TTTAAATCTTAAATCAA
1 TTTAAAT-TTAAATAAA
*
107532 TTTAAAATTTAATTAAA
1 TTT-AAATTTAAATAAA
107549 TTTAAATTTAAAAATAAA
1 TTTAAATTT--AAATAAA
107567 TTTAAA
1 TTTAAA
107573 CCAATTTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
16 6 0.17
17 13 0.37
18 16 0.46
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
TTTAAATTTAAATAAA
Found at i:108381 original size:193 final size:193
Alignment explanation
Indices: 108056--109073 Score: 1551
Period size: 193 Copynumber: 5.3 Consensus size: 193
108046 CATCGAGCCC
* * *
108056 TGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATAACCACCCCA-TTGGTTTCAA-TCTG-T
1 TGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTT-GTTTCAATTC-GCT
* * * * *
108118 TCTTTGTACCTCATCAGGAAGACGAATTTGGTCTACTTCTCAGTGTCTCATTAGGAAGCCAACCT
64 TCTCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCT
*
108183 TTTTA-TGCTTCGCCCTACTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGTTCGCA
129 TTTTATTGCTTCGACCTACTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGA-TTGTTCGCA
108247 T
193 T
*
108248 TGAGTTGGTATACTTCTCTGTATCTCATCAGGAGGATGACCGCCTCACTTGTTTCAATTCGCTTC
1 TGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTC
* *
108313 TCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAATCTAACATTT
66 TCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCTTT
* * * * *
108378 TTATTGCTTCAACCTGCTTCTTAGTATCTCATTAGGAAGCTAGGGTTCGAAGATTGTTCGCAT
131 TTATTGCTTCGACCTACTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTGTTCGCAT
* * *
108441 TGAGTTGGTATACTTCTTTGTATCTCATCAGGAAGATGACCGCCTTACTTGTTTCAATCCGCTTC
1 TGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTC
* * *
108506 TCTATACCTCATTAGGAAGACGAATTTGGTCCACTTTTCAGTATCTCATCAGGAAGCTAACCTTT
66 TCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACC-TT
* * *
108571 TTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTTGAAGATTGTTCGTAT
130 TTTATTGCTTCGACCTACTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTGTTCGCAT
*
108635 TGAGTTGGTATACTTCTCTGTATCTCATTAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTC
1 TGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTC
* *
108700 TCTATACCTCATCAGGAAGACGAATATGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCTTT
66 TCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCTTT
* *
108765 TTATTGCTTCGACCTGCTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTGTTCGCAT
131 TTATTGCTTCGACCTACTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTGTTCGCAT
* ** * * *
108828 TGAGTTGATATACTTCTCTGTATCTCATCAGGAAGATGACCATCTCACTTATTTAAATCCGCTTC
1 TGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTC
* *
108893 TCTGTACCTCATTAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAATCTAACCTTT
66 TCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCTTT
** * * *
108958 TTATTGCTTTAACCTACTTCTCAATATCTCATCAGGAAGCTAGGGTTTGAAGATTGTTCGCAT
131 TTATTGCTTCGACCTACTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTGTTCGCAT
* *
109021 TGAGTTGGTATACTTCTTTGTATCTCATCAGGAAGATGATCGCCTCA-TTGTTT
1 TGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTT
109074 GTGGATAATA
Statistics
Matches: 755, Mismatches: 66, Indels: 10
0.91 0.08 0.01
Matches are distributed among these distances:
192 56 0.07
193 476 0.63
194 223 0.30
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.36
Consensus pattern (193 bp):
TGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTC
TCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCTTT
TTATTGCTTCGACCTACTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTGTTCGCAT
Found at i:108768 original size:387 final size:386
Alignment explanation
Indices: 108056--109073 Score: 1621
Period size: 387 Copynumber: 2.6 Consensus size: 386
108046 CATCGAGCCC
* * *
108056 TGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATAACCACCCCA-TTGGTTTCAATCTG-TT
1 TGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCACCTCACTT-GTTTCAATCCGCTT
* * * * * *
108119 CTTTGTACCTCATCAGGAAGACGAATTTGGTCTACTTCTCAGTGTCTCATTAGGAAGCCAACCTT
65 CTCTGTACCTCATTAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCTT
* *
108184 TTTA-TGCTTCGCCCTACTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGTTCGCAT
130 TTTATTGCTTCGACCTACTTCTCAGTATCTCATCAGGAAGCTGGGGTTTGAAGA-TTGTTCGCAT
*
108248 TGAGTTGGTATACTTCTCTGTATCTCATCAGGAGGATGACCGCCTCACTTGTTTCAATTCGCTTC
194 TGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTC
* * *
108313 TCTGTACCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAATCTAACATTT
259 TCTATACCTCATCAGGAAGACGAATATGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACATTT
* * *
108378 TTATTGCTTCAACCTGCTTCTTAGTATCTCATTAGGAAGCTAGGGTTCGAAGATTGTTCGCAT
324 TTATTGCTTCAACCTGCTTCTCAGTATCTCATCAAGAAGCTAGGGTTCGAAGATTGTTCGCAT
* * *
108441 TGAGTTGGTATACTTCTTTGTATCTCATCAGGAAGATGACCGCCTTACTTGTTTCAATCCGCTTC
1 TGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCACCTCACTTGTTTCAATCCGCTTC
* *
108506 TCTATACCTCATTAGGAAGACGAATTTGGTCCACTTTTCAGTATCTCATCAGGAAGCTAACCTTT
66 TCTGTACCTCATTAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACC-TT
* *
108571 TTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTTGAAGATTGTTCGTATT
130 TTTATTGCTTCGACCTACTTCTCAGTATCTCATCAGGAAGCTGGGGTTTGAAGATTGTTCGCATT
*
108636 GAGTTGGTATACTTCTCTGTATCTCATTAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTCT
195 GAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTCT
*
108701 CTATACCTCATCAGGAAGACGAATATGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTT
260 CTATACCTCATCAGGAAGACGAATATGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACATTTT
* *
108766 TATTGCTTCGACCTGCTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTGTTCGCAT
325 TATTGCTTCAACCTGCTTCTCAGTATCTCATCAAGAAGCTAGGGTTCGAAGATTGTTCGCAT
* * * *
108828 TGAGTTGATATACTTCTCTGTATCTCATCAGGAAGATGACCATCTCACTTATTTAAATCCGCTTC
1 TGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCACCTCACTTGTTTCAATCCGCTTC
*
108893 TCTGTACCTCATTAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAATCTAACCTTT
66 TCTGTACCTCATTAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCTTT
** * *
108958 TTATTGCTTTAACCTACTTCTCAATATCTCATCAGGAAGCTAGGGTTTGAAGATTGTTCGCATTG
131 TTATTGCTTCGACCTACTTCTCAGTATCTCATCAGGAAGCTGGGGTTTGAAGATTGTTCGCATTG
* *
109023 AGTTGGTATACTTCTTTGTATCTCATCAGGAAGATGATCGCCTCA-TTGTTT
196 AGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTT
109074 GTGGATAATA
Statistics
Matches: 581, Mismatches: 48, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
385 58 0.10
386 163 0.28
387 314 0.54
388 46 0.08
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.36
Consensus pattern (386 bp):
TGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCACCTCACTTGTTTCAATCCGCTTC
TCTGTACCTCATTAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCTTT
TTATTGCTTCGACCTACTTCTCAGTATCTCATCAGGAAGCTGGGGTTTGAAGATTGTTCGCATTG
AGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCAATTCGCTTCTC
TATACCTCATCAGGAAGACGAATATGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACATTTTT
ATTGCTTCAACCTGCTTCTCAGTATCTCATCAAGAAGCTAGGGTTCGAAGATTGTTCGCAT
Done.