Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003957.1 Kokia drynarioides strain JFW-HI SEQ_117046, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4691
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35


Found at i:2608 original size:25 final size:23

Alignment explanation


    Indices: 2580--2625  Score: 65
    Period size: 24  Copynumber: 1.9  Consensus size: 23

       2570 GTTTGATCCA

                                     
       2580 AATTAAATTCTAAAAAGATAATTAG
          1 AATTAAA-TCTAAAAA-ATAATTAG

                         *       
       2605 AATTAAATCTAAACAATAATT
          1 AATTAAATCTAAAAAATAATT

       2626 CCTTAATTGA


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  23    6  0.30
  24    7  0.35
  25    7  0.35

ACGTcount: A:0.57, C:0.07, G:0.04, T:0.33


Consensus pattern (23 bp):   
AATTAAATCTAAAAAATAATTAG
Done.