Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000397.1 Kokia drynarioides strain JFW-HI SEQ_111209, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 657

Length: 1095
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28


Found at i:665 original size:12 final size:15

Alignment explanation


    Indices: 631--690  Score: 54
    Period size: 15  Copynumber: 4.1  Consensus size: 15

        621 TTTAATAAAG

                *          
        631 AGTATTAATAATAAT
          1 AGTAATAATAATAAT

                            
        646 AGTAATAATAATAAAT
          1 AGTAATAATAAT-AAT

                 * *       
        662 A-TAACATTAATAAT
          1 AGTAATAATAATAAT

                            
        676 -GTTAATAATAA-AAT
          1 AG-TAATAATAATAAT

             
        690 A
          1 A

        691 AAAAATAAAG


Statistics
Matches: 36,  Mismatches: 5, Indels: 8
        0.73            0.10        0.16

Matches are distributed among these distances:
  14    6  0.17
  15   26  0.72
  16    4  0.11

ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35


Consensus pattern (15 bp):   
AGTAATAATAATAAT
Done.