Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003973.1 Kokia drynarioides strain JFW-HI SEQ_117069, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8256
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.33


Found at i:7615 original size:24 final size:24

Alignment explanation


    Indices: 7497--7621  Score: 142
    Period size: 24  Copynumber: 5.2  Consensus size: 24

       7487 ATATCTGAAA

                            *     **
       7497 AGCTGACGAGCGTAAATGTACAGA
          1 AGCTGACGAGCGTAAACGTACATT

              *       *         * **
       7521 AGTTGACGAGTGTAAACGTATAGA
          1 AGCTGACGAGCGTAAACGTACATT

              *    *         *   *  
       7545 AGTTGACAAGCGTAAACATACTTT
          1 AGCTGACGAGCGTAAACGTACATT

                                    
       7569 AGCTGACGAGCGTAAACGTACATT
          1 AGCTGACGAGCGTAAACGTACATT

                                    
       7593 AGCTGACGAGCGTAAACGTACATT
          1 AGCTGACGAGCGTAAACGTACATT

                 
       7617 AGCTG
          1 AGCTG

       7622 GTGATCACGC


Statistics
Matches: 86,  Mismatches: 15, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  24   86  1.00

ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22


Consensus pattern (24 bp):   
AGCTGACGAGCGTAAACGTACATT
Done.