Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003975.1 Kokia drynarioides strain JFW-HI SEQ_117076, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2235
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34


Found at i:898 original size:19 final size:20

Alignment explanation


    Indices: 866--903  Score: 51
    Period size: 19  Copynumber: 1.9  Consensus size: 20

        856 TTAAAATTAA

                                
        866 TTTTTCAAAATATT-TTTAT
          1 TTTTTCAAAATATTGTTTAT

                   * *         
        885 TTTTTCAGATTATTGTTTA
          1 TTTTTCAAAATATTGTTTA

        904 ATCGATTTTA


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  19   12  0.75
  20    4  0.25

ACGTcount: A:0.26, C:0.05, G:0.05, T:0.63


Consensus pattern (20 bp):   
TTTTTCAAAATATTGTTTAT
Done.