Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003979.1 Kokia drynarioides strain JFW-HI SEQ_117082, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2978
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34


Found at i:2273 original size:42 final size:42

Alignment explanation


    Indices: 2216--2300  Score: 118
    Period size: 42  Copynumber: 2.0  Consensus size: 42

       2206 ACCCCGCTAT

                                                       
       2216 AAAACATGATCTTTAGCGACGCTTAT-CCCACAAACGCAACTA
          1 AAAACATGATCTTTAGCGAC-CTTATCCCCACAAACGCAACTA

                    *         *    *             *    
       2258 AAAACATGGTCTTTAGCGGCCTTTTCCCCACAAACGCCACTA
          1 AAAACATGATCTTTAGCGACCTTATCCCCACAAACGCAACTA

             
       2300 A
          1 A

       2301 TATTAACAAA


Statistics
Matches: 38,  Mismatches: 4, Indels: 2
        0.86            0.09        0.05

Matches are distributed among these distances:
  41    4  0.11
  42   34  0.89

ACGTcount: A:0.34, C:0.31, G:0.13, T:0.22


Consensus pattern (42 bp):   
AAAACATGATCTTTAGCGACCTTATCCCCACAAACGCAACTA
Done.