Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003980.1 Kokia drynarioides strain JFW-HI SEQ_117083, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2450
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35


Found at i:2290 original size:42 final size:42

Alignment explanation


    Indices: 2221--2303  Score: 105
    Period size: 42  Copynumber: 2.0  Consensus size: 42

       2211 CCCGCTATAG

                         *               *            
       2221 AACATGATCTTTAGCGGCGCTTATCCCACTAACGCAACTAAA
          1 AACATGATCTTTAACGGCGCTTATCCCACAAACGCAACTAAA

                  *                *            *     
       2263 AACATGGTCTTTAACGGC-CTCTTTCCCACAAACGCCACTAA
          1 AACATGATCTTTAACGGCGCT-TATCCCACAAACGCAACTAA

       2304 CATTAACAAA


Statistics
Matches: 35,  Mismatches: 5, Indels: 2
        0.83            0.12        0.05

Matches are distributed among these distances:
  41    2  0.06
  42   33  0.94

ACGTcount: A:0.31, C:0.31, G:0.13, T:0.24


Consensus pattern (42 bp):   
AACATGATCTTTAACGGCGCTTATCCCACAAACGCAACTAAA
Done.