Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01003998.1 Kokia drynarioides strain JFW-HI SEQ_117110, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1711
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37


Found at i:371 original size:66 final size:66

Alignment explanation


    Indices: 239--372  Score: 155
    Period size: 66  Copynumber: 2.0  Consensus size: 66

        229 ATTTTGAAGC

                          *                   *                    **        
        239 TGTAGCTGCAATTCGTCATACTTTATTTGAGACTCTGCTTCCCTCGCTGCTACCTTGGCTTCAAG
          1 TGTAGCTGCAATTCATCATACTTTATTTGAGACTATGCTTCCCTCGCTGCTACCTCCGCTTCAAG

             
        304 T
         66 T

                                 *   *                 *         *         * 
        305 TGTAGCTG-AAGTTCATCATATTTTCTTTGAG-CTTATGCTTCTCTCGCTGCTGCCTCCGCTTTA
          1 TGTAGCTGCAA-TTCATCATACTTTATTTGAGAC-TATGCTTCCCTCGCTGCTACCTCCGCTTCA

               
        368 AGT
         64 AGT

              
        371 TG
          1 TG

        373 AGCAAACTGT


Statistics
Matches: 57,  Mismatches: 9, Indels: 4
        0.81            0.13        0.06

Matches are distributed among these distances:
  65    3  0.05
  66   54  0.95

ACGTcount: A:0.16, C:0.25, G:0.19, T:0.40


Consensus pattern (66 bp):   
TGTAGCTGCAATTCATCATACTTTATTTGAGACTATGCTTCCCTCGCTGCTACCTCCGCTTCAAG
T
Done.