Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004002.1 Kokia drynarioides strain JFW-HI SEQ_117114, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2102
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32


Found at i:490 original size:7 final size:7

Alignment explanation


    Indices: 478--507  Score: 51
    Period size: 7  Copynumber: 4.1  Consensus size: 7

        468 AAATGGTCTC

                   
        478 TTTATTA
          1 TTTATTA

                    
        485 TTTATTTA
          1 TTTA-TTA

                   
        493 TTTATTA
          1 TTTATTA

                   
        500 TTTATTA
          1 TTTATTA

             
        507 T
          1 T

        508 AAGATGAGAT


Statistics
Matches: 22,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
   7   15  0.68
   8    7  0.32

ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73


Consensus pattern (7 bp):   
TTTATTA
Done.