Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004003.1 Kokia drynarioides strain JFW-HI SEQ_117115, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1964
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.40


Found at i:29 original size:7 final size:7

Alignment explanation


    Indices: 17--46  Score: 51
    Period size: 7  Copynumber: 4.1  Consensus size: 7

          7 ATCTCATCTT

                   
         17 ATAATAA
          1 ATAATAA

                   
         24 ATAATAA
          1 ATAATAA

                    
         31 ATAAATAA
          1 AT-AATAA

                   
         39 ATAATAA
          1 ATAATAA

             
         46 A
          1 A

         47 GAGACCATTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
   7   15  0.68
   8    7  0.32

ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27


Consensus pattern (7 bp):   
ATAATAA
Done.