Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004004.1 Kokia drynarioides strain JFW-HI SEQ_117117, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2109
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29


Found at i:1875 original size:6 final size:6

Alignment explanation


    Indices: 1864--1893  Score: 60
    Period size: 6  Copynumber: 5.0  Consensus size: 6

       1854 GGCAACCCAA

                                              
       1864 TTATTT TTATTT TTATTT TTATTT TTATTT
          1 TTATTT TTATTT TTATTT TTATTT TTATTT

       1894 ATTTATTTTA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83


Consensus pattern (6 bp):   
TTATTT

Done.