Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004005.1 Kokia drynarioides strain JFW-HI SEQ_117118, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10658
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.35


Found at i:5357 original size:17 final size:17

Alignment explanation


    Indices: 5337--5382  Score: 60
    Period size: 16  Copynumber: 2.8  Consensus size: 17

       5327 ATATTATATA

                             
       5337 TTTTATAATATTTTTAT
          1 TTTTATAATATTTTTAT

                   *         
       5354 TTTTA-ATTATTTTTAT
          1 TTTTATAATATTTTTAT

                          
       5370 TTTT-TAAATATTT
          1 TTTTAT-AATATTT

       5383 AGATTTTTTT


Statistics
Matches: 25,  Mismatches: 2, Indels: 4
        0.81            0.06        0.13

Matches are distributed among these distances:
  16   14  0.56
  17   11  0.44

ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72


Consensus pattern (17 bp):   
TTTTATAATATTTTTAT

Found at i:5388 original size:17 final size:17

Alignment explanation


    Indices: 5353--5391  Score: 51
    Period size: 17  Copynumber: 2.3  Consensus size: 17

       5343 AATATTTTTA

                   *     **  
       5353 TTTTTAATTATTTTTAT
          1 TTTTTAAATATTTAGAT

                             
       5370 TTTTTAAATATTTAGAT
          1 TTTTTAAATATTTAGAT

                 
       5387 TTTTT
          1 TTTTT

       5392 TATTAAATTA


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  17   19  1.00

ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72


Consensus pattern (17 bp):   
TTTTTAAATATTTAGAT

Found at i:5390 original size:16 final size:16

Alignment explanation


    Indices: 5337--5382  Score: 65
    Period size: 17  Copynumber: 2.8  Consensus size: 16

       5327 ATATTATATA

                             
       5337 TTTTATAATATTTTTAT
          1 TTTTA-AATATTTTTAT

                  *          
       5354 TTTTAATTATTTTTATT
          1 TTTTAAATATTTTTA-T

                        
       5371 TTTTAAATATTT
          1 TTTTAAATATTT

       5383 AGATTTTTTT


Statistics
Matches: 26,  Mismatches: 2, Indels: 2
        0.87            0.07        0.07

Matches are distributed among these distances:
  16    9  0.35
  17   17  0.65

ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72


Consensus pattern (16 bp):   
TTTTAAATATTTTTAT
Done.