Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004009.1 Kokia drynarioides strain JFW-HI SEQ_117124, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3092
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.37


Found at i:2028 original size:24 final size:24

Alignment explanation


    Indices: 1967--2029  Score: 72
    Period size: 24  Copynumber: 2.6  Consensus size: 24

       1957 TGAGAAATAA

                     *              
       1967 TATTTCAATTAAACTTTGTTTAAT
          1 TATTTCAATCAAACTTTGTTTAAT

             *       *            * 
       1991 TGTTTCAATTAAACTTTGTTTATT
          1 TATTTCAATCAAACTTTGTTTAAT

                 * *       
       2015 TATTTGAGTCAAACT
          1 TATTTCAATCAAACT

       2030 CTTATTAGTC


Statistics
Matches: 33,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  24   33  1.00

ACGTcount: A:0.30, C:0.10, G:0.08, T:0.52


Consensus pattern (24 bp):   
TATTTCAATCAAACTTTGTTTAAT
Done.