Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004023.1 Kokia drynarioides strain JFW-HI SEQ_117145, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4522
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.31

Warning! 71 characters in sequence are not A, C, G, or T


Found at i:510 original size:31 final size:30

Alignment explanation


    Indices: 475--548  Score: 82
    Period size: 31  Copynumber: 2.5  Consensus size: 30

        465 TAATTTGATG

                                 *        
        475 AATTTTAAGTTTTATATTTTTTAAA-TTAA
          1 AATTTTAAGTTTTATATTTTTGAAATTTAA

                              *              
        504 TTAATTTT-AGTCTTTATGTTTTTGAAATTTAA
          1 --AATTTTAAGT-TTTATATTTTTGAAATTTAA

                          
        536 AATTTTAA-TTTTA
          1 AATTTTAAGTTTTA

        549 ATCTAAACAA


Statistics
Matches: 38,  Mismatches: 2, Indels: 8
        0.79            0.04        0.17

Matches are distributed among these distances:
  29    4  0.11
  30   10  0.26
  31   20  0.53
  32    4  0.11

ACGTcount: A:0.34, C:0.01, G:0.05, T:0.59


Consensus pattern (30 bp):   
AATTTTAAGTTTTATATTTTTGAAATTTAA

Done.